Yano Aiko, Kodama Yutaka, Koike Akiko, Shinya Tomotaka, Kim Hyun-Jung, Matsumoto Mari, Ogita Shinjiro, Wada Yuko, Ohad Nir, Sano Hiroshi
Research and Education Center for Genetic Information, Nara Institute of Science and Technology Nara 630-0192, Japan.
Ann Bot. 2006 Dec;98(6):1179-87. doi: 10.1093/aob/mcl211. Epub 2006 Sep 28.
Methyl CpG-binding proteins are considered to play critical roles in epigenetic control of gene expression by recognizing and interacting with 5-methylcytosine (m(5)C) in eukaryotes. However, among 13 corresponding genes in Arabidopsis thaliana, designated as featuring a methyl-binding domain (MBD), only four have so far been shown actually to bind to m(5)C. One example, AtMBD5, was selected here to screen for interacting proteins.
Yeast two-hybrid assays were used for screening, and physical interaction was confirmed by pull-down and bimolecular fluorescence complementation (BiFC) assays. Cellular localization was analysed by fluorescence-tagged fusion proteins using tobacco (Nicotiana tabacum) cultured bright yellow 2 cells.
A gene finally identified was found to encode AtRAN3, a protein that belongs to the Ran GTPase family, which plays a critical role in nucleocytoplasmic transport and spindle bipolarization during cell division. AtMBD5 and AtRAN3 were clearly shown to interact in the nucleus by BiFC. On co-expression of AtMBD5-cyan fluorescence protein and yellow fluorescence protein-AtRAN3 in tobacco cells, both localized to the nucleus in the resting stage, migrating to the cytoplasm, primarily around chromatin, during mitosis, particularly at metaphase.
These results suggest that AtMBD5 becomes localized to the vicinity of chromosomes with the aid of AtRAN3 during cell division, and may play an important role not only in maintenance of chromatin structures by binding to m(5)C, but also in progress through mitosis by detaching from m(5)C. The present findings also shed light on the physiological function of Ran GTPases, direct target proteins of which have not thus far been well defined, suggesting their key role in chromatin movements in plant cells.
甲基CpG结合蛋白被认为在真核生物中通过识别5-甲基胞嘧啶(m(5)C)并与之相互作用,在基因表达的表观遗传调控中发挥关键作用。然而,在拟南芥中13个具有甲基结合结构域(MBD)的相应基因中,目前仅证实有4个能实际结合m(5)C。这里选择了一个例子AtMBD5来筛选相互作用蛋白。
采用酵母双杂交试验进行筛选,并通过下拉试验和双分子荧光互补(BiFC)试验证实物理相互作用。使用烟草(Nicotiana tabacum)培养的亮黄2细胞,通过荧光标记融合蛋白分析细胞定位。
最终鉴定出的一个基因编码AtRAN3,它是一种属于Ran GTP酶家族的蛋白质,在细胞分裂过程中的核质运输和纺锤体双极形成中起关键作用。BiFC清楚地表明AtMBD5和AtRAN3在细胞核中相互作用。在烟草细胞中共表达AtMBD5-青色荧光蛋白和黄色荧光蛋白-AtRAN3时,两者在静止期都定位于细胞核,在有丝分裂期间,特别是在中期,迁移到细胞质,主要围绕染色质。
这些结果表明,AtMBD5在细胞分裂过程中借助AtRAN3定位于染色体附近,不仅可能通过与m(5)C结合在维持染色质结构方面发挥重要作用,还可能通过从m(5)C上脱离在有丝分裂进程中发挥重要作用。本研究结果还揭示了Ran GTP酶的生理功能,其直接靶蛋白迄今尚未明确界定,表明它们在植物细胞染色质运动中起关键作用。