Korndörfer Ingo P, Danzer Joseph, Schmelcher Mathias, Zimmer Markus, Skerra Arne, Loessner Martin J
Technische Universität München, Lehrstuhl für Biologische Chemie, An der Saatzucht 5, D-85350 Freising, Germany.
J Mol Biol. 2006 Dec 8;364(4):678-89. doi: 10.1016/j.jmb.2006.08.069. Epub 2006 Aug 30.
Bacteriophage murein hydrolases exhibit high specificity towards the cell walls of their host bacteria. This specificity is mostly provided by a structurally well defined cell wall-binding domain that attaches the enzyme to its solid substrate. To gain deeper insight into this mechanism we have crystallized the complete 314 amino acid endolysin from the temperate Listeria monocytogenes phage PSA. The crystal structure of PlyPSA was determined by single wavelength anomalous dispersion methods and refined to 1.8 A resolution. The two functional domains of the polypeptide, providing cell wall-binding and enzymatic activities, can be clearly distinguished and are connected via a linker segment of six amino acid residues. The core of the N-acetylmuramoyl-L-alanine amidase moiety is formed by a twisted, six-stranded beta-sheet flanked by six helices. Although the catalytic domain is unique among the known Listeria phage endolysins, its structure is highly similar to known phosphorylase/hydrolase-like alpha/beta-proteins, including an autolysin amidase from Paenibacillus polymyxa. In contrast, the C-terminal domain of PlyPSA features a novel fold, comprising two copies of a beta-barrel-like motif, which are held together by means of swapped beta-strands. The architecture of the enzyme with its two separate domains explains its unique substrate recognition properties and also provides insight into the lytic mechanisms of related Listeria phage endolysins, a class of enzymes that bear biotechnological potential.
噬菌体胞壁质水解酶对其宿主细菌的细胞壁表现出高度特异性。这种特异性主要由一个结构明确的细胞壁结合结构域提供,该结构域将酶附着于其固体底物上。为了更深入地了解这一机制,我们已使来自温和型单核细胞增生李斯特菌噬菌体PSA的完整314个氨基酸的内溶素结晶。通过单波长反常色散方法确定了PlyPSA的晶体结构,并将其精修至1.8埃分辨率。该多肽的两个功能结构域,分别提供细胞壁结合活性和酶活性,可清晰区分,并通过一个六个氨基酸残基的连接片段相连。N - 乙酰胞壁酰 - L - 丙氨酸酰胺酶部分的核心由一个扭曲的六链β - 折叠构成,两侧为六个螺旋。尽管催化结构域在已知的李斯特菌噬菌体内溶素中是独特的,但其结构与已知的磷酸化酶/水解酶样α/β - 蛋白高度相似,包括来自多粘芽孢杆菌的一种自溶素酰胺酶。相比之下,PlyPSA的C末端结构域具有一种新颖的折叠方式,由两个β - 桶状基序的拷贝组成,它们通过交换的β - 链结合在一起。该酶具有两个独立结构域的结构解释了其独特的底物识别特性,也为相关李斯特菌噬菌体内溶素的裂解机制提供了见解,这类酶具有生物技术潜力。