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碱基动力学对DNA构象性质的影响:77K下刚性双链体中静态构象状态的观测

Influence of base dynamics on the conformational properties of DNA: Observation of static conformational states in rigid duplexes at 77 K.

作者信息

Neely Robert K, Jones Anita C

机构信息

School of Chemistry and the Collaborative Optical Spectroscopy, Micromanipulation and Imaging Centre (COSMIC), The University of Edinburgh, Edinburgh EH9 3JJ, UK.

出版信息

J Am Chem Soc. 2006 Dec 20;128(50):15952-3. doi: 10.1021/ja064390m.

DOI:10.1021/ja064390m
PMID:17165705
Abstract

Time-resolved fluorescence of 2-aminopurine-labeled DNA duplexes at 77 K reveals the relationship between base dynamics and the conformational heterogeneity that results in the well-known multiexponential fluorescence decay at room temperature. The conformation that exhibits rapid interbase charge transfer at room temperature is not populated in the frozen duplex at 77 K; this geometry is accessed by thermal motion of the bases, it is not a minimum energy structure of the duplex. Three photophysically distinct conformational states persist in the frozen duplex; these are minimum energy structures and do not interconvert at room temperature on the time scale of the 2-aminopurine excited-state lifetime.

摘要

77K下2-氨基嘌呤标记的DNA双链体的时间分辨荧光揭示了碱基动力学与构象异质性之间的关系,这种构象异质性导致了室温下众所周知的多指数荧光衰减。在室温下表现出快速碱基间电荷转移的构象在77K的冷冻双链体中不存在;这种几何结构是通过碱基的热运动获得的,它不是双链体的最低能量结构。三种光物理上不同的构象状态在冷冻双链体中持续存在;这些是最低能量结构,在室温下2-氨基嘌呤激发态寿命的时间尺度上不会相互转化。

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Influence of base dynamics on the conformational properties of DNA: Observation of static conformational states in rigid duplexes at 77 K.碱基动力学对DNA构象性质的影响:77K下刚性双链体中静态构象状态的观测
J Am Chem Soc. 2006 Dec 20;128(50):15952-3. doi: 10.1021/ja064390m.
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引用本文的文献

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Exciplexes and conical intersections lead to fluorescence quenching in π-stacked dimers of 2-aminopurine with natural purine nucleobases.激基复合物和锥形交叉导致 2-氨基嘌呤与天然嘌呤碱基形成的π堆积二聚体中的荧光猝灭。
Photochem Photobiol Sci. 2013 Aug;12(8):1387-400. doi: 10.1039/c3pp25449f.
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Fluorescence probing of T box antiterminator RNA: insights into riboswitch discernment of the tRNA discriminator base.T盒抗终止子RNA的荧光探测:对tRNA鉴别碱基核糖开关识别的见解。
Biochem Biophys Res Commun. 2009 Nov 27;389(4):616-21. doi: 10.1016/j.bbrc.2009.09.037. Epub 2009 Sep 13.