Leekumjorn Sukit, Sum Amadeu K
Virginia Polytechnic Institute and State University, Department of Chemical Engineering, Blacksburg VA 24061, USA.
Biochim Biophys Acta. 2007 Feb;1768(2):354-65. doi: 10.1016/j.bbamem.2006.11.003. Epub 2006 Nov 11.
Molecular dynamics simulations were used for a comprehensive study of the structural properties of saturated lipid bilayers, DPPC and DPPE, near the main phase transition. Though the chemical structure of DPPC and DPPE are largely similar (they only differ in the choline and ethanolamine groups), their transformation process from a gel to a liquid-crystalline state is contrasting. For DPPC, three distinct structures can be identified relative to the melting temperature (Tm): below Tm with "mixed" domains consisting of lipids that are tilted with partial overlap of the lipid tails between leaflet; near Tm with a slight increase in the average area per lipid, resulting in a rearrangement of the lipid tails and an increase in the bilayer thickness; and above Tm with unhindered lipid tails in random motion resulting in an increase in %gauche formed and increase in the level of interdigitation between lipid leaflets. For DPPE, the structures identified were below Tm with "ordered" domains consisting of slightly tilted lipid tails and non-overlapping lipid tails between leaflets, near Tm with minimal rearrangement of the lipids as the bilayer thickness reduces slightly with increasing temperature, and above Tm with unhindered lipid tails as that for DPPC. For DPPE, most of the lipid tails do not overlap as observed to DPPC, which is due to the tight packing of the DPPE molecules. The non-overlapping behavior of DPPE above Tm is confirmed from the density profile of the terminal carbon atoms in each leaflet, which shows a narrow distribution near the center of the bilayer core. This study also demonstrates that atomistic simulations are capable of capturing the phase transition behavior of lipid bilayers, providing a rich set of molecular and structural information at and near the transition state.
分子动力学模拟被用于全面研究饱和脂质双层(二棕榈酰磷脂酰胆碱和二棕榈酰磷脂酰乙醇胺)在主相变附近的结构特性。尽管二棕榈酰磷脂酰胆碱和二棕榈酰磷脂酰乙醇胺的化学结构大体相似(它们仅在胆碱和乙醇胺基团上有所不同),但它们从凝胶态到液晶态的转变过程却截然不同。对于二棕榈酰磷脂酰胆碱,相对于熔点(Tm)可识别出三种不同结构:低于Tm时,具有“混合”结构域,由脂尾倾斜且在片层间部分重叠的脂质组成;接近Tm时,每个脂质的平均面积略有增加,导致脂尾重新排列且双层厚度增加;高于Tm时,脂尾自由运动,导致形成的%gauche增加且脂质片层间的叉指化程度增加。对于二棕榈酰磷脂酰乙醇胺,识别出的结构为:低于Tm时,具有“有序”结构域,由脂尾轻微倾斜且在片层间不重叠的脂质组成;接近Tm时,随着双层厚度随温度略有降低,脂质的重排最小;高于Tm时,与二棕榈酰磷脂酰胆碱一样脂尾自由运动。对于二棕榈酰磷脂酰乙醇胺,与二棕榈酰磷脂酰胆碱不同,观察到大多数脂尾不重叠,这是由于二棕榈酰磷脂酰乙醇胺分子紧密堆积所致。二棕榈酰磷脂酰乙醇胺在Tm以上的不重叠行为通过每个片层中末端碳原子的密度分布得到证实,该分布在双层核心中心附近显示出狭窄的分布。这项研究还表明,原子模拟能够捕捉脂质双层的相变行为,在转变状态及附近提供丰富的分子和结构信息。