Deng Yiqun, Zheng Qi, Liu Jie, Cheng Chao-Sheng, Kallenbach Neville R, Lu Min
Department of Biochemistry, Weill Medical College of Cornell University, 1300 York Avenue, New York, NY 10021, USA.
Protein Sci. 2007 Feb;16(2):323-8. doi: 10.1110/ps.062590807. Epub 2006 Dec 22.
The hydrophobic core of the GCN4 leucine-zipper dimerization domain is formed by a parallel helical association between nonpolar side chains at the a and d positions of the heptad repeat. Here we report a self-assembling coiled-coil array formed by the GCN4-pAe peptide that differs from the wild-type GCN4 leucine zipper by alanine substitutions at three charged e positions. GCN4-pAe is incompletely folded in normal solution conditions yet self-assembles into an antiparallel tetraplex in crystals by formation of unanticipated hydrophobic seams linking the last two heptads of two parallel double-stranded coiled coils. The GCN4-pAe tetramers in the lattice associate laterally through the identical interactions to those in the intramolecular dimer-dimer interface. The van der Waals packing interaction in the solid state controls extended supramolecular assembly of the protein, providing an unusual atomic scale view of a mesostructure.
GCN4亮氨酸拉链二聚化结构域的疏水核心由七肽重复序列a和d位置的非极性侧链之间的平行螺旋缔合形成。本文报道了一种由GCN4-pAe肽形成的自组装卷曲螺旋阵列,它与野生型GCN4亮氨酸拉链的不同之处在于,在三个带电荷的e位置进行了丙氨酸取代。GCN4-pAe在正常溶液条件下折叠不完全,但在晶体中通过形成连接两个平行双链卷曲螺旋最后两个七肽的意外疏水接缝自组装成反平行四聚体。晶格中的GCN4-pAe四聚体通过与分子内二聚体-二聚体界面相同的相互作用进行横向缔合。固态中的范德华堆积相互作用控制着蛋白质的扩展超分子组装,提供了一个不同寻常的介观结构原子尺度视图。