发现空间：一个交互式数据分析应用程序。

DiscoverySpace: an interactive data analysis application.

作者信息

Robertson Neil, Oveisi-Fordorei Mehrdad, Zuyderduyn Scott D, Varhol Richard J, Fjell Christopher, Marra Marco, Jones Steven, Siddiqui Asim

机构信息

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Research Centre, British Columbia Cancer Agency, Vancouver, BC, Canada.

出版信息

Genome Biol. 2007;8(1):R6. doi: 10.1186/gb-2007-8-1-r6.

DOI:10.1186/gb-2007-8-1-r6

PMID:17210078

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1839122/

Abstract

DiscoverySpace is a graphical application for bioinformatics data analysis. Users can seamlessly traverse references between biological databases and draw together annotations in an intuitive tabular interface. Datasets can be compared using a suite of novel tools to aid in the identification of significant patterns. DiscoverySpace is of broad utility and its particular strength is in the analysis of serial analysis of gene expression (SAGE) data. The application is freely available online.

摘要

DiscoverySpace是一款用于生物信息学数据分析的图形化应用程序。用户可以在生物数据库之间无缝浏览参考文献，并在直观的表格界面中汇总注释。可以使用一套新颖的工具比较数据集，以帮助识别显著模式。DiscoverySpace具有广泛的实用性，其特别优势在于对基因表达序列分析（SAGE）数据的分析。该应用程序可在网上免费获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9609/1839122/44b7f2fe73aa/gb-2007-8-1-r6-1.jpg

相似文献

DiscoverySpace: an interactive data analysis application.

Genome Biol. 2007;8(1):R6. doi: 10.1186/gb-2007-8-1-r6.

VisANT: an online visualization and analysis tool for biological interaction data.

BMC Bioinformatics. 2004 Feb 19;5:17. doi: 10.1186/1471-2105-5-17.

Onto-Tools: new additions and improvements in 2006.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W206-11. doi: 10.1093/nar/gkm327. Epub 2007 Jun 21.

Importing ArrayExpress datasets into R/Bioconductor.

Bioinformatics. 2009 Aug 15;25(16):2092-4. doi: 10.1093/bioinformatics/btp354. Epub 2009 Jun 8.

dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface.

BMC Bioinformatics. 2009 Aug 25;10:265. doi: 10.1186/1471-2105-10-265.

GeneNotes--a novel information management software for biologists.

BMC Bioinformatics. 2005 Feb 1;6:20. doi: 10.1186/1471-2105-6-20.

Caleydo: connecting pathways and gene expression.

Bioinformatics. 2009 Oct 15;25(20):2760-1. doi: 10.1093/bioinformatics/btp432. Epub 2009 Jul 20.

Venn diagrams in bioinformatics.

Brief Bioinform. 2021 Sep 2;22(5). doi: 10.1093/bib/bbab108.

Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration.

BMC Bioinformatics. 2006 Jan 23;7:33. doi: 10.1186/1471-2105-7-33.

TidyGEO: preparing analysis-ready datasets from Gene Expression Omnibus.

J Integr Bioinform. 2023 Dec 5;21(1). doi: 10.1515/jib-2023-0021. eCollection 2024 Mar 1.

引用本文的文献

Cowpea and abiotic stresses: identification of reference genes for transcriptional profiling by qPCR.

Plant Methods. 2018 Oct 12;14:88. doi: 10.1186/s13007-018-0354-z. eCollection 2018.

Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development.

BMC Genomics. 2015 Jul 24;16(1):545. doi: 10.1186/s12864-015-1770-3.

Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhizi infection.

BMC Plant Biol. 2014 Sep 10;14:236. doi: 10.1186/s12870-014-0236-0.

Expression Analysis of Sugarcane Aquaporin Genes under Water Deficit.

J Nucleic Acids. 2013;2013:763945. doi: 10.1155/2013/763945. Epub 2013 Dec 29.

Early transcriptional response of soybean contrasting accessions to root dehydration.

PLoS One. 2013 Dec 12;8(12):e83466. doi: 10.1371/journal.pone.0083466. eCollection 2013.

Natural antisense transcripts in plants: a review and identification in soybean infected with Phakopsora pachyrhizi SuperSAGE library.

ScientificWorldJournal. 2013 Jun 26;2013:219798. doi: 10.1155/2013/219798. Print 2013.

Molecular mechanisms of toxicity of silver nanoparticles in zebrafish embryos.

Environ Sci Technol. 2013 Jul 16;47(14):8005-14. doi: 10.1021/es401758d. Epub 2013 Jun 26.

Expression dynamics and genome distribution of osmoprotectants in soybean: identifying important components to face abiotic stress.

BMC Bioinformatics. 2013;14 Suppl 1(Suppl 1):S7. doi: 10.1186/1471-2105-14-S1-S7. Epub 2013 Jan 14.

Twist1 transcriptional targets in the developing atrio-ventricular canal of the mouse.

PLoS One. 2012;7(7):e40815. doi: 10.1371/journal.pone.0040815. Epub 2012 Jul 16.

Large scale phosphoproteome analysis of LNCaP human prostate cancer cells.

Mol Biosyst. 2012 Aug;8(8):2174-82. doi: 10.1039/c2mb25151e. Epub 2012 Jun 14.

本文引用的文献

The HUGO Gene Nomenclature Database, 2006 updates.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D319-21. doi: 10.1093/nar/gkj147.

Database resources of the National Center for Biotechnology Information.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D173-80. doi: 10.1093/nar/gkj158.

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D108-10. doi: 10.1093/nar/gkj143.

A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells.

Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18485-90. doi: 10.1073/pnas.0509455102. Epub 2005 Dec 13.

From XML to RDF: how semantic web technologies will change the design of 'omic' standards.

Nat Biotechnol. 2005 Sep;23(9):1099-103. doi: 10.1038/nbt1139.

WEBSAGE: a web tool for visual analysis of differentially expressed human SAGE tags.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W693-5. doi: 10.1093/nar/gki444.

The Sequence Ontology: a tool for the unification of genome annotations.

Genome Biol. 2005;6(5):R44. doi: 10.1186/gb-2005-6-5-r44. Epub 2005 Apr 29.

BioMOBY successfully integrates distributed heterogeneous bioinformatics Web Services. The PlaNet exemplar case.

Plant Physiol. 2005 May;138(1):5-17. doi: 10.1104/pp.104.059170.

Atlas - a data warehouse for integrative bioinformatics.

BMC Bioinformatics. 2005 Feb 21;6:34. doi: 10.1186/1471-2105-6-34.

Entrez Gene: gene-centered information at NCBI.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D54-8. doi: 10.1093/nar/gki031.

文献AI研究员

20分钟写一篇综述，助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型，支持多种主流文档格式。

立即体验

发现空间：一个交互式数据分析应用程序。

DiscoverySpace: an interactive data analysis application.

作者信息

机构信息

出版信息

相似文献

引用本文的文献

本文引用的文献

文献AI研究员

用中文搜PubMed

文档翻译

Suppr 超能文献

发现空间：一个交互式数据分析应用程序。

DiscoverySpace: an interactive data analysis application.

作者信息

机构信息

出版信息

相似文献

引用本文的文献

本文引用的文献