蚜虫数据库：一个用于蚜虫基因组资源的数据库。
AphidBase: a database for aphid genomic resources.
作者信息
Gauthier Jean-Pierre, Legeai Fabrice, Zasadzinski Alain, Rispe Claude, Tagu Denis
机构信息
INRA, Agrocampus Rennes, UMR 1099 BiO3P (Biology of Organisms and Populations applied to Plant Protection), F-35653 LE RHEU, France.
出版信息
Bioinformatics. 2007 Mar 15;23(6):783-4. doi: 10.1093/bioinformatics/btl682. Epub 2007 Jan 19.
UNLABELLED
AphidBase aims to (i) store recently acquired genomic resources on aphids and (ii) compare them to other insect resources as functional annotation tools. For that, the Drosophila melanogaster genome has been loaded in the database using the GMOD open source software for a comparison with the 17 069 pea aphid unique transcripts (contigs) and the 13 639 gene transcripts of the Anopheles gambiae. Links to FlyBase and A.gambiae Entrez databases allow a rapid characterization of the putative functions of the aphid sequences. Text mining of the D.melanogaster literature was performed to construct a network of co-cited gene or protein names, which should facilitate functional annotation of aphid homolog sequences. AphidBase represents one of the first genomic databases for a hemipteran insect.
AVAILABILITY
未标注
蚜虫数据库旨在（i）存储最近获取的蚜虫基因组资源，以及（ii）将它们作为功能注释工具与其他昆虫资源进行比较。为此，已使用GMOD开源软件将黑腹果蝇基因组加载到数据库中，以便与17069条豌豆蚜独特转录本（重叠群）和冈比亚按蚊的13639条基因转录本进行比较。与果蝇数据库和冈比亚按蚊Entrez数据库的链接可快速鉴定蚜虫序列的推定功能。通过对黑腹果蝇文献进行文本挖掘，构建了一个共引基因或蛋白质名称网络，这应有助于对蚜虫同源序列进行功能注释。蚜虫数据库是半翅目昆虫的首批基因组数据库之一。
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