Bao Xiaoguang, Liang Guoming, Wong Ning-Bew, Gu Jiande
Drug Design & Discovery Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Shanghai Institutes for Biological Sciences, CAS, Shanghai 201203, China.
J Phys Chem A. 2007 Feb 1;111(4):666-72. doi: 10.1021/jp064761l.
The microsolvation patterns of the uracil radical anion in water clusters U-(H2O)n with n ranging from 3 to 5 were investigated by the density functional theory approach. The electron detachment energies (VDE) of the stable anionic complexes with different numbers of hydration water are predicted. The linear dependence of the VDE value of the most stable anionic complexes with respect to the hydration number suggests the importance of the clustered waters in the microsolvation of the radical anion of the nucleobases. The formation of the water clusters is found to be necessary in the most stable conformers of the tri-, tetra-, and pentahydrated radical anion of uracil. The microsolvation pattern with three or more well-separated hydration water molecules in the first hydration layer is less stable than the arrangement with the waters in tight clusters. The charge transfer between the anionic uracil and the hydration water is high. Good agreement between the experimental and the theoretical vertical detachment energy yield in this study further demonstrates the practicability of the B3LYP/DZP++ approach in the study of radical anions of the DNA subunits.
采用密度泛函理论方法研究了尿嘧啶自由基阴离子在水簇U-(H₂O)ₙ(n范围为3至5)中的微溶剂化模式。预测了具有不同水化水分子数的稳定阴离子配合物的电子脱离能(VDE)。最稳定阴离子配合物的VDE值相对于水合数的线性相关性表明了簇状水在核碱基自由基阴离子微溶剂化中的重要性。发现在尿嘧啶的三水合、四水合和五水合自由基阴离子的最稳定构象中,水簇的形成是必要的。在第一水化层中具有三个或更多个分隔良好的水化水分子的微溶剂化模式比水紧密聚集的排列方式稳定性更低。阴离子尿嘧啶与水化水之间的电荷转移很高。本研究中实验和理论垂直脱离能产率之间的良好一致性进一步证明了B3LYP/DZP++方法在DNA亚基自由基阴离子研究中的实用性。