Iwaki Takafumi, Saito Takuya, Yoshikawa Kenichi
Okayama Institute for Quantum Physics, Kyoyama 1-9-1, Okayama-shi, Okayama 700-0015, Japan.
Colloids Surf B Biointerfaces. 2007 Apr 15;56(1-2):126-33. doi: 10.1016/j.colsurfb.2006.10.040. Epub 2006 Nov 2.
DNA is a genetic material found in all life on Earth. DNA is composed of four types of nucleotide subunits, and forms a double-helical one-dimensional polyelectrolyte chain. If we focus on the microscopic molecular structure, DNA is a rigid rod-like molecule. On the other hand, with coarse graining, a long-chain DNA exhibits fluctuating behavior over the whole molecule due to thermal fluctuation. Owe to its semiflexible nature, individual giant DNA molecule undergoes a large discrete transition in the higher-order structure. In this folding transition into a compact state, small ions in the solution have a critical effect, since DNA is highly charged. In the present article, we interpret the characteristic features of DNA compaction while paying special attention to the role of small ions, in relation to a variety of single-chain morphologies generated as a result of compaction.
DNA是地球上所有生命中都存在的一种遗传物质。DNA由四种核苷酸亚基组成,并形成一条双螺旋的一维聚电解质链。如果关注微观分子结构,DNA是一种刚性棒状分子。另一方面,从粗粒化角度来看,由于热涨落,长链DNA在整个分子上表现出波动行为。由于其半柔性性质,单个巨型DNA分子在高阶结构中会发生大的离散转变。在这种折叠成紧凑状态的转变过程中,溶液中的小离子具有关键作用,因为DNA带有大量电荷。在本文中,我们在特别关注小离子作用的同时,解释DNA压缩的特征,以及与压缩产生的各种单链形态的关系。