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基于大肠杆菌连续培养的无启动子调控下蛋白质丰度波动分析。

Analysis of fluctuation in protein abundance without promoter regulation based on Escherichia coli continuous culture.

作者信息

Yamada Tadashi, Furusawa Chikara, Nagahisa Keisuke, Kashiwagi Akiko, Yomo Tetsuya, Shimizu Hiroshi

机构信息

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan.

出版信息

Biosystems. 2007 Nov-Dec;90(3):614-22. doi: 10.1016/j.biosystems.2007.02.001. Epub 2007 Feb 9.

Abstract

Fluctuation of protein abundance of isogenic Escherichia coli cells in uniform environment was studied. Based on a continuous culture system, which provides homogeneous culture environment, we investigated the fluctuation in GlnA protein abundance regardless of known glnALG promoter regulation. As results by flow cytometer, we found that the GlnA protein abundance in the cells exhibit a large fluctuation, even though GlnA protein is an essential factor for cell growth and the environment is homogeneous. Furthermore, among several steady states, transient processes of such heterogeneous cell population were investigated, by changing the environmental conditions. The results showed that the expression of GlnA protein can be controlled, depending on its necessity, even though there is no known regulatory machinery. These results may provide a clue to understand the nature of regulation of protein expression dynamics with the stochastic fluctuation.

摘要

研究了同基因大肠杆菌细胞在均匀环境中蛋白质丰度的波动情况。基于能提供均匀培养环境的连续培养系统,我们研究了谷氨酰胺合成酶A(GlnA)蛋白丰度的波动,而不考虑已知的glnALG启动子调控。通过流式细胞仪检测结果发现,尽管GlnA蛋白是细胞生长的必需因子且环境是均匀的,但细胞内GlnA蛋白丰度仍表现出较大波动。此外,在几个稳态中,通过改变环境条件研究了这种异质细胞群体的瞬态过程。结果表明,即使没有已知的调控机制,GlnA蛋白的表达也可以根据其必要性进行控制。这些结果可能为理解蛋白质表达动态调控本质及其随机波动提供线索。

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