Kjeldsen Kasper Urup, Loy Alexander, Jakobsen Trine Fredlund, Thomsen Trine Rolighed, Wagner Michael, Ingvorsen Kjeld
Department of Microbiology, Institute of Biological Sciences, University of Aarhus, Aarhus C., Denmark.
FEMS Microbiol Ecol. 2007 May;60(2):287-98. doi: 10.1111/j.1574-6941.2007.00288.x.
The diversity of sulfate-reducing bacteria (SRB) inhabiting the extreme hypersaline sediment (270 g L(-1) NaCl) of the northern arm of Great Salt Lake was studied by integrating cultivation and genotypic identification approaches involving PCR-based retrieval of 16S rRNA and dsrAB genes, the latter encoding major subunits of dissimilatory (bi) sulfite reductase. The majority (85%) of dsrAB sequences retrieved directly from the sediment formed a lineage of high (micro) diversity affiliated with the genus Desulfohalobium, while others represented novel lineages within the families Desulfohalobiaceae and Desulfobacteraceae or among Gram-positive SRB. Using the same sediment, SRB enrichment cultures were established in parallel at 100 and at 190 g L(-1) NaCl using different electron donors. After 5-6 transfers, dsrAB and 16S rRNA gene-based profiling of these enrichment cultures recovered a SRB community composition congruent with the cultivation-independent profiling of the sediment. Pure culture representatives of the predominant Desulfohalobium-related lineage and of one of the Desulfobacteraceae-affilated lineages were successfully obtained. The growth performance of these isolates and of the enrichment cultures suggests that the sediment SRB community of the northern arm of Great Salt Lake consists of moderate halophiles, which are salt-stressed at the in situ salinity of 27%.
通过整合培养和基于PCR的16S rRNA及dsrAB基因检索(后者编码异化型(双)亚硫酸盐还原酶的主要亚基)的基因分型鉴定方法,研究了栖息于大盐湖北部极端高盐沉积物(270 g L⁻¹ NaCl)中的硫酸盐还原菌(SRB)的多样性。直接从沉积物中检索到的dsrAB序列大部分(85%)形成了一个与嗜盐脱硫菌属相关的高(微)多样性谱系,而其他序列则代表了嗜盐脱硫菌科和脱硫杆菌科内或革兰氏阳性SRB中的新谱系。使用相同的沉积物,利用不同电子供体,分别在100 g L⁻¹和190 g L⁻¹ NaCl条件下平行建立了SRB富集培养物。经过5 - 6次传代后,基于dsrAB和16S rRNA基因对这些富集培养物进行分析,得到的SRB群落组成与沉积物的非培养分析结果一致。成功获得了主要的嗜盐脱硫菌相关谱系以及一个与脱硫杆菌科相关谱系的纯培养代表菌株。这些分离菌株和富集培养物的生长性能表明,大盐湖北部沉积物中的SRB群落由中度嗜盐菌组成,它们在原位盐度27%时受到盐胁迫。