Tandon Chanderdeep, De Lisle Robert C, Boulatnikov Igor, Naik Pradeep Kumar
Biotechnology and Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh, 173215, India.
Mol Cell Biochem. 2007 Aug;302(1-2):157-67. doi: 10.1007/s11010-007-9437-2. Epub 2007 Mar 28.
The C-terminal PDZ-binding motifs are required for polarized apical/basolateral localization of many membrane proteins. Ezrin-radixin-moesin (ERM) proteins regulate the organization and function of specific cortical structures in polarized epithelial cells by connecting filamentous (F)-actin to plasma membrane proteins through EBP50. Previous work showed that the membrane phosphoprotein apactin (an 80-kDa type I membrane protein derived from pro-Muclin) is associated with the acinar cell apical actin cytoskeleton and that this association is modulated by changes in the phosphorylation state of the apactin cytosolic tail. The carboxyl-terminal amino acids of apactin (-STKL-COOH) are predicted to form a type I PDZ-binding domain, similar to that of CFTR (-DTRL-COOH). Pairwise sequence comparison between NHERF/EBP50 and PDZK1/CAP70 PDZ domains reveals significant identity among the 83 amino-acid residues (12-92) of EBP50 and CAP70 (241-323), which are involved in the interaction with the carboxyl-terminal peptides (STKL-COOH and phosphomimetics) of apactin. Hence, the specificity and affinity of interactions are identical between them, which is corroborated with the two hybrid results. Substitution of all the four-carboxyl-terminal amino acids in the wild type to Ala reduces the interaction. Only the carbonyl oxygen and amide nitrogen of Ala are found to be involved in hydrogen bonding. Further, truncation of the wild carboxyl-terminal peptide to RGQPP-COOH, showed very low affinity of interaction with PDZ1 domain. Only the atom O(epsilon1) of Gln-2 hydrogen bonds with N(epsilon2) of His72 of PDZ domain. Ser-3 amino acid in wild type apactin protein (STKL-COOH) is not involved in hydrogen bonding with PDZ1 domain. However, substitution of Ser-3 to Asp-3 in PDTKL-COOH peptide increases the affinity of interaction of PDTKL-COOH with PDZ1 domain. Thus, carboxyl-terminal Asp(D) -3, Thr(T) -2, Lys(K) -1 and Leu(L) 0 are involved in numerous interactions with PDZ1 domains of NHERF/EBP50 and PDZK1/CAP70.
许多膜蛋白的极化顶端/基底外侧定位需要C末端PDZ结合基序。埃兹蛋白-根蛋白-膜突蛋白(ERM)通过EBP50将丝状(F)-肌动蛋白连接到质膜蛋白,从而调节极化上皮细胞中特定皮质结构的组织和功能。先前的研究表明,膜磷蛋白阿帕汀(一种源自前黏液素的80 kDa I型膜蛋白)与腺泡细胞顶端肌动蛋白细胞骨架相关,并且这种关联受阿帕汀胞质尾磷酸化状态变化的调节。阿帕汀的羧基末端氨基酸(-STKL-COOH)预计会形成I型PDZ结合结构域,类似于囊性纤维化跨膜传导调节因子(CFTR)(-DTRL-COOH)的结构域。NHERF/EBP50和PDZK1/CAP70 PDZ结构域之间的成对序列比较显示,EBP50的83个氨基酸残基(12-92)和CAP70的(241-323)之间具有显著的同源性,这些残基参与了与阿帕汀羧基末端肽(STKL-COOH和磷酸模拟物)的相互作用。因此,它们之间相互作用的特异性和亲和力是相同的,这得到了双杂交结果的证实。将野生型中的所有四个羧基末端氨基酸替换为丙氨酸会降低相互作用。发现只有丙氨酸的羰基氧和酰胺氮参与氢键形成。此外,将野生羧基末端肽截短为RGQPP-COOH,显示与PDZ1结构域的相互作用亲和力非常低。只有Gln-2的O(ε1)原子与PDZ结构域的His72的N(ε2)形成氢键。野生型阿帕汀蛋白(STKL-COOH)中的Ser-3氨基酸不参与与PDZ1结构域的氢键形成。然而,在PDTKL-COOH肽中将Ser-3替换为Asp-3会增加PDTKL-COOH与PDZ1结构域相互作用的亲和力。因此,羧基末端的Asp(D)-3、Thr(T)-2、Lys(K)-1和Leu(L)0参与了与NHERF/EBP50和PDZK1/CAP70的PDZ1结构域的大量相互作用。