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1
The role of a minor groove spine of hydration in stabilizing poly(dA).poly(dT) against fluctuational interbase H-bond disruption in the premelting temperature regime.
Nucleic Acids Res. 1992 Feb 11;20(3):415-9. doi: 10.1093/nar/20.3.415.
2
Temperature dependence of the Raman spectrum of DNA. II. Raman signatures of premelting and melting transitions of poly(dA).poly(dT) and comparison with poly(dA-dT).poly(dA-dT).
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3
Synergistic effects in the melting of DNA hydration shell: melting of the minor groove hydration spine in poly(dA).poly(dT) and its effect on base pair stability.
Biophys J. 1993 May;64(5):1385-93. doi: 10.1016/S0006-3495(93)81504-2.
4
Premelting thermal fluctuational base pair opening probability of poly(dA).poly(dT) as predicted by the modified self-consistent phonon theory.
Biopolymers. 1991 Feb 5;31(2):139-48. doi: 10.1002/bip.360310202.
5
Structure of the hydration shells of oligo(dA-dT).oligo(dA-dT) and oligo(dA).oligo(dT) tracts in B-type conformation on the basis of Monte Carlo calculations.
Biopolymers. 1990;30(5-6):563-81. doi: 10.1002/bip.360300509.
6
Dependence of the hydration shell structure in the minor groove of the DNA double helix on the groove width as revealed by Monte Carlo simulation.
Biopolymers. 1991 Oct 15;31(12):1445-53. doi: 10.1002/bip.360311211.
7
Calculated enhancement of open base pair probability downstream of a (TATA)2 box.
Biophys J. 1992 Jan;61(1):58-62. doi: 10.1016/S0006-3495(92)81815-5.
8
Anomalous structure and properties of poly (dA).poly(dT). Computer simulation of the polynucleotide structure with the spine of hydration in the minor groove.
Nucleic Acids Res. 1987 Jan 12;15(1):293-311. doi: 10.1093/nar/15.1.293.
9
Determination of base and backbone contributions to the thermodynamics of premelting and melting transitions in B DNA.
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Temperature-dependent ultraviolet resonance Raman spectroscopy of the premelting state of dA.dT DNA.
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引用本文的文献
1
MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids.
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W679-85. doi: 10.1093/nar/gkh384.
2
Structural insights into the effect of hydration and ions on A-tract DNA: a molecular dynamics study.
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3
Solvation of nucleosides in aqueous mixtures of organic solvents: relevance to DNA open basepairs.
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4
Melting profile and temperature dependent binding constant of an anticancer drug daunomycin-DNA complex.
Eur Biophys J. 1996;24(4):203-12. doi: 10.1007/BF00205101.
5
Synergistic effects in the melting of DNA hydration shell: melting of the minor groove hydration spine in poly(dA).poly(dT) and its effect on base pair stability.
Biophys J. 1993 May;64(5):1385-93. doi: 10.1016/S0006-3495(93)81504-2.
6
Premelting base pair opening probability and drug binding constant of a daunomycin-poly d(GCAT).poly d(ATGC) complex.
Biophys J. 1994 Mar;66(3 Pt 1):820-6. doi: 10.1016/s0006-3495(94)80858-6.
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Calculation of far-infrared absorption in polymer DNA.
Phys Rev A Gen Phys. 1989 Mar 15;39(6):3173-3180. doi: 10.1103/physreva.39.3173.
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Structure of a B-DNA dodecamer. III. Geometry of hydration.
J Mol Biol. 1981 Sep 25;151(3):535-56. doi: 10.1016/0022-2836(81)90009-7.
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Ordered water structure around a B-DNA dodecamer. A quantitative study.
J Mol Biol. 1983 Jan 5;163(1):129-46. doi: 10.1016/0022-2836(83)90033-5.
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Premelting and the hydrogen-exchange open state in synthetic RNA duplexes.
Biopolymers. 1984 Nov;23(11 Pt 1):2099-125. doi: 10.1002/bip.360231102.
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Low-frequency lattice mode predictions in A-DNA compared to experimental observations and significance for A-to-B conformation change.
Biopolymers. 1984 Sep;23(9):1795-8. doi: 10.1002/bip.360230912.
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Poly(dA).poly(dT) exists in an unusual conformation under physiological conditions: propidium binding to poly(dA).poly(dT) and poly[d(A-T)].poly[d(A-T)].
Biochemistry. 1985 Jul 16;24(15):3991-9. doi: 10.1021/bi00336a029.
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Regularities in formation of the spine of hydration in the DNA minor groove and its influence on the DNA structure.
FEBS Lett. 1985 Jul 1;186(1):98-102. doi: 10.1016/0014-5793(85)81347-8.
8
Anomalous structure and properties of poly (dA).poly(dT). Computer simulation of the polynucleotide structure with the spine of hydration in the minor groove.
Nucleic Acids Res. 1987 Jan 12;15(1):293-311. doi: 10.1093/nar/15.1.293.
9
Poly(dA).poly(dT) is a B-type double helix with a distinctively narrow minor groove.
Nature. 1987;325(6107):821-3. doi: 10.1038/325821a0.
10
Monte-Carlo simulation of DNA duplex hydration. B and B' conformations of poly(dA).poly(dT) have different hydration shells.
J Biomol Struct Dyn. 1988 Dec;6(3):575-86. doi: 10.1080/07391102.1988.10506508.
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