Praprotnik Matej, Delle Site Luigi, Kremer Kurt
Max-Planck-Institut für Polymerforschung, Ackermannweg 10, D-55128 Mainz, Germany.
J Chem Phys. 2007 Apr 7;126(13):134902. doi: 10.1063/1.2714540.
The authors report adaptive resolution molecular dynamics simulations of a flexible linear polymer in solution. The solvent, i.e., a liquid of tetrahedral molecules, is represented within a certain radius from the polymer's center of mass with a high level of detail, while a lower coarse-grained resolution is used for the more distant solvent. The high resolution sphere moves with the polymer and freely exchanges molecules with the low resolution region through a transition regime. The solvent molecules change their resolution and number of degrees of freedom on the fly. The authors show that their approach correctly reproduces the static and dynamic properties of the polymer chain and surrounding solvent.
作者报告了溶液中柔性线性聚合物的自适应分辨率分子动力学模拟。溶剂,即四面体分子的液体,在距聚合物质心一定半径范围内以高细节水平表示,而对于距离更远的溶剂则使用较低的粗粒度分辨率。高分辨率球体随聚合物移动,并通过过渡区域与低分辨率区域自由交换分子。溶剂分子在动态过程中改变其分辨率和自由度数量。作者表明,他们的方法正确地再现了聚合物链和周围溶剂的静态和动态特性。