Nanometer-sized amino acids for the synthesis of nanometer-scale water-soluble molecular rods of precise length.

This paper introduces the unnatural amino acid Abc as a nanometer-length building block for the creation of water-soluble molecular rods of exceptional size. Abc is a water-soluble variant of the unnatural amino acid 4’-amino-[1,1’-biphenyl]-4-carboxylic acid (Abc) with lysinelike propyloxyammonium side chains at the 2- and 5-positions. The protected building block Fmoc-Abc-OH () can be used in standard Fmoc-based solid-phase peptide synthesis to create water-soluble rodlike peptides in nanometer unit lengths up to at least ten nanometers. Oligomers up to and including the decamer were easily prepared on a Rink amide resin. These peptides are easy to purify and characterize by standard reverse-phase HPLC, H NMR, and ESI-MS techniques. The Abc amino acid can be combined with various standard amino acids to provide well behaved hybrid and biologically relevant peptides. Building block is efficiently prepared on a multigram scale from commercially available starting materials by way of the Suzuki cross-coupling reaction. Molecular modeling studies of Abc oligomers show only minor effects from torsional and bending motions and support a model in which the oligomers are relatively straight and rigid. Fluorescence resonance energy transfer (FRET) studies are consistent with a model in which the Abc oligomers behave as rigid rods with a length of 1.0 nm per monomer unit.