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埃及伊蚊、冈比亚按蚊及其他蚊种中Tango转座子的基因组与进化分析

Genomic and evolutionary analyses of Tango transposons in Aedes aegypti, Anopheles gambiae and other mosquito species.

作者信息

Coy M R, Tu Z

机构信息

Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.

出版信息

Insect Mol Biol. 2007 Aug;16(4):411-21. doi: 10.1111/j.1365-2583.2007.00735.x. Epub 2007 May 16.


DOI:10.1111/j.1365-2583.2007.00735.x
PMID:17506852
Abstract

Tango is a transposon of the Tc1 family and was originally discovered in the African malaria mosquito, Anopheles gambiae. Here we report a systematic analysis of the genome sequence of the yellow fever mosquito, Aedes aegypti, which uncovered three distinct Tango transposons. We name the only An. gambiae Tango transposon AgTango1 and the three Ae. aegypti Tango elements AeTango1-3. Like AgTango1, AeTango1 and AeTango2 elements both have members that retain characteristics of autonomous elements such as intact open reading frames and terminal inverted repeats (TIRs). AeTango3 is a degenerate transposon with no full-length members. All full-length Tango transposons contain subterminal direct repeats within their TIRs. AgTango1 and AeTango1-3 form a single clade among other Tc1 transposons. Within this clade, AgTango1 and AeTango1 are closely related and share approximately 80% identity at the amino acid level, which exceeds the level of similarity of the majority of host genes in the two species. A survey of Tango in other mosquito species was carried out using degenerate PCR. Tango was isolated and sequenced in all members of the An. gambiae species complex, Aedes albopictus and Ochlerotatus atropalpus. Oc. atropalpus contains a rich diversity of Tango elements, while Tango elements in Ae. albopictus and the An. gambiae species complex all belong to Tango1. No Tango was detected in Culex pipiens quinquefasciatus, Anopheles stephensi, Anopheles dirus, Anopheles farauti or Anopheles albimanus using degenerate PCR. Bioinformatic searches of the Cx. p. quinquefasciatus (~10 x coverage) and An. stephensi (0.33 x coverage) databases also failed to uncover any Tango elements. Although other evolutionary scenarios cannot be ruled out, there are indications that Tango1 underwent horizontal transfer among divergent mosquito species.

摘要

Tango是Tc1家族的一种转座子,最初在非洲疟蚊冈比亚按蚊中发现。在此,我们报告了对黄热病蚊埃及伊蚊基因组序列的系统分析,该分析发现了三种不同的Tango转座子。我们将唯一的冈比亚按蚊Tango转座子命名为AgTango1,将三种埃及伊蚊Tango元件命名为AeTango1 - 3。与AgTango1一样,AeTango1和AeTango2元件都有一些成员保留了自主元件的特征,如完整的开放阅读框和末端反向重复序列(TIRs)。AeTango3是一种退化转座子,没有全长成员。所有全长Tango转座子在其TIRs内都含有亚末端直接重复序列。AgTango1和AeTango1 - 3在其他Tc1转座子中形成一个单系分支。在这个分支中,AgTango1和AeTango1关系密切,在氨基酸水平上具有约80%的同一性,这超过了这两个物种中大多数宿主基因的相似性水平。使用简并PCR对其他蚊种中的Tango进行了调查。在冈比亚按蚊物种复合体的所有成员、白纹伊蚊和棕背伊蚊中都分离并测序了Tango。棕背伊蚊含有丰富多样的Tango元件,而白纹伊蚊和冈比亚按蚊物种复合体中的Tango元件都属于Tango1。使用简并PCR在致倦库蚊、斯氏按蚊、大劣按蚊、法氏按蚊或白跗按蚊中未检测到Tango。对致倦库蚊(约10倍覆盖度)和斯氏按蚊(0.33倍覆盖度)数据库的生物信息学搜索也未能发现任何Tango元件。尽管不能排除其他进化情况,但有迹象表明Tango1在不同的蚊种之间经历了水平转移。

相似文献

[1]
Genomic and evolutionary analyses of Tango transposons in Aedes aegypti, Anopheles gambiae and other mosquito species.

Insect Mol Biol. 2007-8

[2]
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[3]
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引用本文的文献

[1]
Mosquitoes LTR retrotransposons: a deeper view into the genomic sequence of Culex quinquefasciatus.

PLoS One. 2012-2-24

[2]
The mosquito Aedes aegypti has a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs.

BMC Genomics. 2011-12-15

[3]
Next-generation sequencing reveals recent horizontal transfer of a DNA transposon between divergent mosquitoes.

PLoS One. 2011-2-10

[4]
Comparative genomics of small RNA regulatory pathway components in vector mosquitoes.

BMC Genomics. 2008-9-18

[5]
Evolution and horizontal transfer of a DD37E DNA transposon in mosquitoes.

Genetics. 2007-12

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