• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

活性位点关闭有助于反应物原子并列,从而启动人dUTPase的催化作用。

Active site closure facilitates juxtaposition of reactant atoms for initiation of catalysis by human dUTPase.

作者信息

Varga Balázs, Barabás Orsolya, Kovári Júlia, Tóth Judit, Hunyadi-Gulyás Eva, Klement Eva, Medzihradszky Katalin F, Tölgyesi Ferenc, Fidy Judit, Vértessy Beáta G

机构信息

Institute of Enzymology, Biological Research Center, Hungarian Academy of Sciences, Budapest, Hungary.

出版信息

FEBS Lett. 2007 Oct 2;581(24):4783-8. doi: 10.1016/j.febslet.2007.09.005. Epub 2007 Sep 12.

DOI:10.1016/j.febslet.2007.09.005
PMID:17880943
Abstract

Human dUTPase, essential for DNA integrity, is an important survival factor for cancer cells. We determined the crystal structure of the enzyme:alpha,beta-imino-dUTP:Mg complex and performed equilibrium binding experiments in solution. Ordering of the C-terminus upon the active site induces close juxtaposition of the incoming nucleophile attacker water oxygen and the alpha-phosphorus of the substrate, decreasing their distance below the van der Waals limit. Complex interactions of the C-terminus with both substrate and product were observed via a specifically designed tryptophan sensor, suitable for further detailed kinetic and ligand binding studies. Results explain the key functional role of the C-terminus.

摘要

人源dUTPase对DNA完整性至关重要,是癌细胞的重要生存因子。我们确定了该酶:α,β-亚氨基-dUTP:Mg复合物的晶体结构,并在溶液中进行了平衡结合实验。活性位点上C末端的有序排列导致进入的亲核攻击水分子氧与底物的α-磷紧密并列,使其距离减小至范德华极限以下。通过专门设计的色氨酸传感器观察到C末端与底物和产物的复杂相互作用,适用于进一步详细的动力学和配体结合研究。结果解释了C末端的关键功能作用。

相似文献

1
Active site closure facilitates juxtaposition of reactant atoms for initiation of catalysis by human dUTPase.活性位点关闭有助于反应物原子并列,从而启动人dUTPase的催化作用。
FEBS Lett. 2007 Oct 2;581(24):4783-8. doi: 10.1016/j.febslet.2007.09.005. Epub 2007 Sep 12.
2
Active site of mycobacterial dUTPase: structural characteristics and a built-in sensor.分枝杆菌dUTP酶的活性位点:结构特征及内置传感器
Biochem Biophys Res Commun. 2008 Aug 15;373(1):8-13. doi: 10.1016/j.bbrc.2008.05.130. Epub 2008 Jun 2.
3
Molecular shape and prominent role of beta-strand swapping in organization of dUTPase oligomers.β链交换在dUTPase寡聚体组织中的分子形状及显著作用。
FEBS Lett. 2009 Mar 4;583(5):865-71. doi: 10.1016/j.febslet.2009.02.011. Epub 2009 Feb 11.
4
Molecular mechanism of ADP-ribose hydrolysis by human NUDT5 from structural and kinetic studies.基于结构和动力学研究的人源NUDT5催化ADP-核糖水解的分子机制
J Mol Biol. 2008 Jun 6;379(3):568-78. doi: 10.1016/j.jmb.2008.04.006. Epub 2008 Apr 8.
5
Crystal structure of dUTPase from equine infectious anaemia virus; active site metal binding in a substrate analogue complex.马传染性贫血病毒dUTPase的晶体结构;底物类似物复合物中的活性位点金属结合
J Mol Biol. 1999 Jan 15;285(2):655-73. doi: 10.1006/jmbi.1998.2332.
6
Crystal structure of the Mycobacterium tuberculosis dUTPase: insights into the catalytic mechanism.结核分枝杆菌dUTPase的晶体结构:对催化机制的深入了解。
J Mol Biol. 2004 Aug 6;341(2):503-17. doi: 10.1016/j.jmb.2004.06.028.
7
Crystal structure of a dUTPase.一种脱氧尿苷三磷酸酶的晶体结构。
Nature. 1992 Feb 20;355(6362):740-3. doi: 10.1038/355740a0.
8
Methylene substitution at the alpha-beta bridging position within the phosphate chain of dUDP profoundly perturbs ligand accommodation into the dUTPase active site.在dUDP磷酸链的α-β桥接位置进行亚甲基取代,会严重干扰配体进入dUTPase活性位点的容纳过程。
Proteins. 2008 Apr;71(1):308-19. doi: 10.1002/prot.21757.
9
Structures of dimeric nonstandard nucleotide triphosphate pyrophosphatase from Pyrococcus horikoshii OT3: functional significance of interprotomer conformational changes.嗜热栖热菌OT3二聚体非标准核苷酸三磷酸焦磷酸酶的结构:原体间构象变化的功能意义
J Mol Biol. 2008 Jan 25;375(4):1013-25. doi: 10.1016/j.jmb.2007.11.018. Epub 2007 Nov 13.
10
The crystal structure of a complex of Campylobacter jejuni dUTPase with substrate analogue sheds light on the mechanism and suggests the "basic module" for dimeric d(C/U)TPases.空肠弯曲菌dUTPase与底物类似物复合物的晶体结构揭示了其作用机制,并为二聚体d(C/U)TPases提出了“基本模块”。
J Mol Biol. 2004 Oct 1;342(5):1583-97. doi: 10.1016/j.jmb.2004.07.050.

引用本文的文献

1
Structural characterization of dUTPase from Legionella pneumophila.嗜肺军团菌dUTPase的结构表征
Acta Crystallogr F Struct Biol Commun. 2025 Apr 1;81(Pt 4):155-162. doi: 10.1107/S2053230X25001815. Epub 2025 Mar 17.
2
Full-length inhibitor protein is the most effective to perturb human dUTPase activity.全长抑制蛋白对干扰人dUTPase活性最为有效。
Sci Rep. 2025 Feb 9;15(1):4836. doi: 10.1038/s41598-025-86131-7.
3
The homodimerization domain of the Stl repressor is crucial for efficient inhibition of mycobacterial dUTPase.
Stl 阻遏物的同源二聚化结构域对于有效抑制分枝杆菌 dUTP 酶至关重要。
Sci Rep. 2024 Nov 8;14(1):27171. doi: 10.1038/s41598-024-76349-2.
4
Structural dynamics of human deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase).人脱氧尿苷 5'-三磷酸核苷水解酶(dUTPase)的结构动力学。
Sci Rep. 2024 Oct 30;14(1):26081. doi: 10.1038/s41598-024-76548-x.
5
Enzyme kinetics of deoxyuridine triphosphatase from Western corn rootworm.西玉米根萤叶甲脱氧尿嘧啶三磷酸酶的酶动力学。
BMC Res Notes. 2023 Nov 16;16(1):336. doi: 10.1186/s13104-023-06618-2.
6
The Bacteriophage-Phage-Inducible Chromosomal Island Arms Race Designs an Interkingdom Inhibitor of dUTPases.噬菌体-诱导染色体岛臂竞赛设计了一种针对 dUTPases 的种间抑制剂。
Microbiol Spectr. 2023 Feb 14;11(1):e0323222. doi: 10.1128/spectrum.03232-22. Epub 2023 Jan 9.
7
Redox status of cysteines does not alter functional properties of human dUTPase but the Y54C mutation involved in monogenic diabetes decreases protein stability.半胱氨酸的氧化还原状态不会改变人 dUTP 酶的功能特性,但涉及单基因糖尿病的 Y54C 突变会降低蛋白质稳定性。
Sci Rep. 2021 Sep 28;11(1):19197. doi: 10.1038/s41598-021-98790-3.
8
Structural comparisons of host and African swine fever virus dUTPases reveal new clues for inhibitor development.宿主和非洲猪瘟病毒 dUTP 酶的结构比较为抑制剂开发提供了新的线索。
J Biol Chem. 2021 Jan-Jun;296:100015. doi: 10.1074/jbc.RA120.014005. Epub 2020 Nov 23.
9
Structural Insight into African Swine Fever Virus dUTPase Reveals a Novel Folding Pattern in the dUTPase Family.非洲猪瘟病毒 dUTP 酶的结构洞察揭示了 dUTP 酶家族中的一种新折叠模式。
J Virol. 2020 Jan 31;94(4). doi: 10.1128/JVI.01698-19.
10
Beyond Chelation: EDTA Tightly Binds Taq DNA Polymerase, MutT and dUTPase and Directly Inhibits dNTPase Activity.螯合作用之外:EDTA 可紧密结合 Taq DNA 聚合酶、MutT 和 dUTP 酶,并直接抑制 dNTP 酶活性。
Biomolecules. 2019 Oct 17;9(10):621. doi: 10.3390/biom9100621.