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嗜碱地芽孢杆菌HTA426新型耐热甘氨酸氧化酶的表征与结构建模

Characterization and structural modeling of a novel thermostable glycine oxidase from Geobacillus kaustophilus HTA426.

作者信息

Martínez-Martínez Irene, Navarro-Fernández José, García-Carmona Francisco, Takami Hideto, Sánchez-Ferrer Alvaro

机构信息

Department of Biochemistry and Molecular Biology-A, Faculty of Biology, University of Murcia, Campus Espinardo, E-30071 Murcia, Spain.

出版信息

Proteins. 2008 Mar;70(4):1429-41. doi: 10.1002/prot.21690.

Abstract

Glycine oxidase from Geobacillus kaustophilus HTA426 (GOXK) is a 43 kDa monomer flavoenzyme containing noncovalently bound FAD. The induction of the enzyme resulted in the expression of a fully soluble protein with higher specific activity than those previously reported for GOX from B. subtilis (GOXB). A study of the kinetic properties of this novel GOXK revealed the lowest KM values for most of the substrates analyzed, with the exception of D-proline which kept a similar value and had the highest Vmax value reported. The Vmax/KM ratio maintained a substrate preference of GOXK for amines of small size, like glycine, sarcosine, N-ethyl-glycine, and glycine-ethyl-ester. GOXK presented good stability at 60-70 degrees C and in alkaline media (pH 6-9.5). The putative tridimensional structure was modeled by sequence alignment and by comparing the changes between GOXK and GOXB, and the residues that could be responsible for the substrate specificity as well as those essential for the catalytic activity were found. The comparison between the possible topology of GOXK with that of GOXB showed changes at the putative interactions between monomers for the building of the tetrameric oligomerization.

摘要

嗜碱地芽孢杆菌HTA426的甘氨酸氧化酶(GOXK)是一种43 kDa的单体黄素酶,含有非共价结合的FAD。该酶的诱导表达产生了一种完全可溶的蛋白质,其比先前报道的枯草芽孢杆菌的GOX(GOXB)具有更高的比活性。对这种新型GOXK的动力学特性研究表明,除D-脯氨酸保持相似值且具有报道的最高Vmax值外,大多数分析底物的KM值最低。Vmax/KM比值表明GOXK对小尺寸胺类(如甘氨酸、肌氨酸、N-乙基甘氨酸和甘氨酸乙酯)具有底物偏好。GOXK在60-70℃和碱性介质(pH 6-9.5)中表现出良好的稳定性。通过序列比对以及比较GOXK和GOXB之间的变化,对假定的三维结构进行了建模,发现了可能负责底物特异性的残基以及催化活性所必需的残基。GOXK与GOXB可能的拓扑结构比较表明,在构建四聚体寡聚体时,单体之间的假定相互作用发生了变化。

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