Wedekind Jan, Reguera David
Departament de Física Fonamental, Universitat de Barcelona, Martí i Franquès, 1, 08028 Barcelona, Spain.
J Chem Phys. 2007 Oct 21;127(15):154516. doi: 10.1063/1.2786457.
We investigate the ability of different cluster definitions to serve as a good reaction coordinate in molecular simulations of nucleation. In particular, the most commonly used Stillinger criterion [J. Chem. Phys. 38, 1486 (1963)] is compared with the cluster definition introduced by ten Wolde and Frenkel [J. Chem. Phys. 109, 9901 (1998)]. The accuracy of these two different cluster definitions is tested by using molecular dynamics to study the vapor-liquid nucleation of Lennard-Jones argon as a model system. We are able to compare the size of the critical cluster identified by each cluster definition with a completely model-independent value provided by the nucleation theorem, aided by a recently introduced method that accurately extracts the location of the transition state directly from the kinetics. It is found that the Stillinger definition strongly overestimates the size of small molecular clusters by up to a factor of 2. A simple change of the Stillinger radius is unable to rectify this deficiency. On the contrary, the ten Wolde-Frenkel definition, while being only slightly more elaborate than a simple Stillinger criterion, is remarkably successful in identifying the correct molecular excess of the small clusters if the parameters are chosen adequately. The method described here can also be generalized to identify a proper reaction coordinate in other activated processes.
我们研究了不同团簇定义在成核分子模拟中作为良好反应坐标的能力。特别地,将最常用的斯蒂林格准则[《化学物理杂志》38, 1486 (1963)]与ten Wolde和Frenkel提出的团簇定义[《化学物理杂志》109, 9901 (1998)]进行了比较。通过使用分子动力学研究 Lennard-Jones 氩气的气-液成核作为模型系统,测试了这两种不同团簇定义的准确性。借助最近引入的一种直接从动力学中准确提取过渡态位置的方法,我们能够将每个团簇定义所确定的临界团簇大小与成核定理提供的完全与模型无关的值进行比较。结果发现,斯蒂林格定义严重高估了小分子团簇的大小,高估倍数高达2倍。对斯蒂林格半径进行简单改变并不能纠正这一缺陷。相反,ten Wolde-Frenkel定义虽然仅比简单的斯蒂林格准则稍微复杂一些,但如果参数选择得当,在识别小团簇的正确分子过量方面非常成功。这里描述的方法也可以推广到识别其他活化过程中的合适反应坐标。