Pártay Lívia B, Hantal György, Jedlovszky Pál, Vincze Arpád, Horvai George
Laboratory of Interfaces and Nanosize Systems, Institute of Chemistry, Eötvös Loránd University, Pázmány Péter stny. 1/a, H-1117 Budapest, Hungary.
J Comput Chem. 2008 Apr 30;29(6):945-56. doi: 10.1002/jcc.20852.
A new method is presented to identify the truly interfacial molecules at fluid/fluid interfaces seen at molecular resolution, a situation that regularly occurs in computer simulations. In the new method, the surface is scanned by moving a probe sphere of a given radius along a large set of test lines that are perpendicular to the plane of the interface. The molecules that are hit by the probe spheres are regarded as interfacial ones, and the position of the test spheres when they are in contact with the interfacial molecules give an estimate of the surface. The dependence of the method on various parameters, in particular, on the size of the probe sphere is discussed in detail. Based on the list of molecules identified as truly interfacial ones, two measures of the molecular scale roughness of the surface are proposed. The bivariate distribution of the lateral and normal distances of two points of the interface provides a full description of the molecular scale morphology of the surface in a statistical sense. For practical purposes two parameters related to the dependence of the average normal distance of two surface points on their lateral distance can be used. These two parameters correspond to the frequency and amplitude of the surface roughness, respectively. The new method is applied for the analysis of the molecular level structure of the liquid-vapor interface of water. As an immediate result of the application of the new method it is shown that the orientational preferences of the interfacial water molecules depend only on the local curvature of the interface, and hence the molecules located at wells of concave curvature of the rippled surface prefer the same orientations as waters located at the surface of small apolar solutes. The vast majority of the truly interfacial molecules are found to form a strongly percolating two-dimensional hydrogen bonded network at the surface, whereas no percolation is observed within the second molecular layer beyond the surface.
本文提出了一种新方法,用于在分子分辨率下识别流体/流体界面处的真正界面分子,这种情况在计算机模拟中经常出现。在新方法中,通过将给定半径的探测球沿着大量垂直于界面平面的测试线移动来扫描表面。被探测球碰到的分子被视为界面分子,探测球与界面分子接触时的位置给出了表面的估计。详细讨论了该方法对各种参数的依赖性,特别是对探测球大小的依赖性。基于被确定为真正界面分子的分子列表,提出了两种表面分子尺度粗糙度的度量方法。界面两点的横向和法向距离的二元分布从统计意义上全面描述了表面的分子尺度形态。出于实际目的,可以使用与两个表面点的平均法向距离对其横向距离的依赖性相关的两个参数。这两个参数分别对应于表面粗糙度的频率和幅度。将新方法应用于水的液-气界面分子水平结构的分析。作为应用新方法的直接结果,表明界面水分子的取向偏好仅取决于界面的局部曲率,因此位于波纹表面凹曲率阱处的分子与位于小非极性溶质表面的水分子具有相同的取向偏好。发现绝大多数真正的界面分子在表面形成了一个强渗流的二维氢键网络,而在表面之外的第二个分子层内未观察到渗流。