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中子蛋白质晶体学:超越生物大分子的折叠结构

Neutron protein crystallography: beyond the folding structure of biological macromolecules.

作者信息

Niimura Nobuo, Bau Robert

机构信息

Institute of Applied Beam Science, Graduate School of Science and Engineering, Ibaraki University, 4-12-1 Naka-Narusawa, Hitachi, Ibaraki 316-8511, Japan.

出版信息

Acta Crystallogr A. 2008 Jan;64(Pt 1):12-22. doi: 10.1107/S0108767307043498. Epub 2007 Dec 21.

Abstract

Neutron diffraction provides an experimental method of directly locating H atoms in proteins, a technique complementary to ultra-high-resolution X-ray diffraction. Three different types of neutron diffractometers for biological macromolecules have been constructed in Japan, France and the USA, and they have been used to determine the crystal structures of proteins up to resolution limits of 1.5-2.5 A. Results relating to H-atom positions and hydration patterns in proteins have been obtained from these studies. Examples include the geometrical details of hydrogen bonds, the role of H atoms in enzymatic activity, CH3 configuration, H/D exchange in proteins and oligonucleotides, and the dynamical behavior of hydration structures, all of which have been extracted from these structural results and reviewed. Other techniques, such as the growth of large single crystals and a database of hydrogen and hydration in proteins, are described.

摘要

中子衍射提供了一种直接确定蛋白质中氢原子位置的实验方法,这是一种与超高分辨率X射线衍射互补的技术。日本、法国和美国已建造了三种不同类型的用于生物大分子的中子衍射仪,并且它们已被用于确定分辨率高达1.5 - 2.5埃的蛋白质晶体结构。从这些研究中已获得了与蛋白质中氢原子位置和水合模式相关的结果。例子包括氢键的几何细节、氢原子在酶活性中的作用、甲基构型、蛋白质和寡核苷酸中的氢/氘交换以及水合结构的动力学行为,所有这些都是从这些结构结果中提取并进行综述的。还描述了其他技术,例如大单晶的生长以及蛋白质中氢和水合的数据库。

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