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鼠伤寒沙门氏菌磷酸甘露糖异构酶的克隆、表达、纯化、结晶及初步X射线晶体学分析

Cloning, expression, purification, crystallization and preliminary X-ray crystallographic analysis of the mannose 6-phosphate isomerase from Salmonella typhimurium.

作者信息

Gowda Giri, Sagurthi Someswar Rao, Savithri H S, Murthy M R N

机构信息

Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Feb 1;64(Pt 2):81-4. doi: 10.1107/S1744309107067930. Epub 2008 Jan 18.

Abstract

Mannose 6-phosphate isomerase (MPI; EC 5.3.1.8) catalyzes the reversible isomerization of D-mannose 6-phosphate (M6P) and D-fructose 6-phosphate (F6P). In the eukaryotes and prokaryotes investigated to date, the enzyme has been reported to play a crucial role in D-mannose metabolism and supply of the activated mannose donor guanosine diphosphate D-mannose (GDP-D-mannose). In the present study, MPI was cloned from Salmonella typhimurium, overexpressed in Escherichia coli and purified using Ni-NTA affinity column chromatography. Purified MPI crystallized in space group P2(1)2(1)2(1), with unit-cell parameters a = 36.03, b = 92.2, c = 111.01 A. A data set extending to 1.66 A resolution was collected with 98.8% completeness using an image-plate detector system mounted on a rotating-anode X-ray generator. The asymmetric unit of the crystal cell was compatible with the presence of a monomer of MPI. A preliminary structure solution of the enzyme has been obtained by molecular replacement using Candida albicans MPI as the phasing model and the program Phaser. Further refinement and model building are in progress.

摘要

甘露糖 6-磷酸异构酶(MPI;EC 5.3.1.8)催化 D-甘露糖 6-磷酸(M6P)和 D-果糖 6-磷酸(F6P)的可逆异构化反应。在迄今为止研究的真核生物和原核生物中,据报道该酶在 D-甘露糖代谢以及活性甘露糖供体二磷酸鸟苷 D-甘露糖(GDP-D-甘露糖)的供应中起着关键作用。在本研究中,MPI 从鼠伤寒沙门氏菌中克隆出来,在大肠杆菌中过表达,并使用镍-氮三乙酸亲和柱色谱法进行纯化。纯化后的 MPI 在空间群 P2(1)2(1)2(1) 中结晶,晶胞参数为 a = 36.03、b = 92.2、c = 111.01 Å。使用安装在旋转阳极 X 射线发生器上的成像板探测器系统收集了一个延伸至 1.66 Å 分辨率的数据集,完整性为 98.8%。晶胞的不对称单元与 MPI 的一个单体存在情况相符。通过以白色念珠菌 MPI 为相位模型并使用 Phaser 程序进行分子置换,已获得该酶的初步结构解析。进一步的精修和模型构建正在进行中。

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本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Phaser crystallographic software.
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. doi: 10.1107/S0021889807021206. Epub 2007 Jul 13.
3
Ablation of mouse phosphomannose isomerase (Mpi) causes mannose 6-phosphate accumulation, toxicity, and embryonic lethality.
J Biol Chem. 2006 Mar 3;281(9):5916-27. doi: 10.1074/jbc.M511982200. Epub 2005 Dec 8.
6
A novel disorder of N-glycosylation due to phosphomannose isomerase deficiency.
Biochem Biophys Res Commun. 1998 Apr 7;245(1):38-42. doi: 10.1006/bbrc.1998.8385.
7
Domain organisation in phosphomannose isomerases (types I and II).
Biochim Biophys Acta. 1998 Jan 15;1382(1):5-7. doi: 10.1016/s0167-4838(97)00122-2.
10
Solvent content of protein crystals.
J Mol Biol. 1968 Apr 28;33(2):491-7. doi: 10.1016/0022-2836(68)90205-2.

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