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色氨酸-208残基在来自硕大利什曼原虫的抗坏血酸过氧化物酶催化细胞色素c氧化中的作用——对Trp208Phe突变体和野生型酶的动力学研究

Role of tryptophan-208 residue in cytochrome c oxidation by ascorbate peroxidase from Leishmania major-kinetic studies on Trp208Phe mutant and wild type enzyme.

作者信息

Yadav Rajesh K, Dolai Subhankar, Pal Swati, Adak Subrata

机构信息

Division of Structural Biology and Bioinformatics, Indian Institute of Chemical Biology, 4 Raja S.C. Mullick Road, Kolkata-700 032, India.

出版信息

Biochim Biophys Acta. 2008 May;1784(5):863-71. doi: 10.1016/j.bbapap.2008.02.006. Epub 2008 Feb 23.

Abstract

Ascorbate peroxidase from L. Major (LmAPX) is a functional hybrid between cytochrome c peroxidase (CCP) and ascorbate peroxidase (APX). We utilized point mutagenesis to investigate if a conserved proximal tryptophan residue (Trp208) among Class I peroxidase helps in controlling catalysis. The mutant W208F enzyme had no effect on both apparent dissociation constant of the enzyme-cytochrome c complex and K(m) value for cytochrome c indicating that cytochrome c binding affinity to the enzyme did not alter after mutation. Surprisingly, the mutant was 1000 times less active than the wild type in cytochrome c oxidation without affecting the second order rate constant of compound I formation. Our diode array stopped-flow spectral studies showed that the substrate unbound wild type enzyme reacts with H(2)O(2) to form compound I (compound II type spectrum), which was quite different from that of compound I in W208F mutant as well as horseradish peroxidase (HRP). The spectrum of the compound I in wild type LmAPX showed a red shift from 409 nm to 420 nm with equal intensity, which was broadly similar to those of known Trp radical. In case of compound I for W208F mutant, the peak in the Soret region was decreased in heme intensity at 409 nm and was not shifted to 420 nm suggesting this type of spectrum was similar to that of the known porphyrin pi-cation radical. In case of an enzyme-H(2)O(2)-ascorbate system, the kinetic for formation and decay of compound I and II of a mutant enzyme was almost identical to that of a wild type enzyme. Thus, the results of cytochrome c binding, compound I formation rate and activity assay suggested that Trp208 in LmAPX was essential for electron transfer from cytochrome c to heme ferryl but was not indispensable for ascorbate or guaiacol oxidation.

摘要

来自硕大利什曼原虫的抗坏血酸过氧化物酶(LmAPX)是细胞色素c过氧化物酶(CCP)和抗坏血酸过氧化物酶(APX)之间的一种功能性杂合体。我们利用点突变来研究I类过氧化物酶中一个保守的近端色氨酸残基(Trp208)是否有助于控制催化作用。突变体W208F酶对酶-细胞色素c复合物的表观解离常数和细胞色素c的米氏常数(Km)均无影响,这表明突变后细胞色素c与该酶的结合亲和力未发生改变。令人惊讶的是,该突变体在细胞色素c氧化反应中的活性比野生型低1000倍,且不影响化合物I形成的二级速率常数。我们的二极管阵列停流光谱研究表明,未结合底物的野生型酶与H2O2反应形成化合物I(化合物II型光谱),这与W208F突变体以及辣根过氧化物酶(HRP)中的化合物I有很大不同。野生型LmAPX中化合物I的光谱显示从409 nm到420 nm有红移且强度相等,这与已知的色氨酸自由基的光谱大致相似。对于W208F突变体的化合物I,在409 nm处血红素强度的Soret区域峰降低,且未移至420 nm,表明这种光谱类型与已知的卟啉π-阳离子自由基相似。在酶-H2O2-抗坏血酸体系中,突变酶的化合物I和II的形成与衰减动力学几乎与野生型酶相同。因此,细胞色素c结合、化合物I形成速率和活性测定的结果表明,LmAPX中的Trp208对于从细胞色素c到血红素铁卟啉的电子转移至关重要,但对于抗坏血酸或愈创木酚氧化并非不可或缺。

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