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计算地球化学反应路径——用从头算和分子动力学探索Al(H₂O)₆³⁺(aq) + nH₂O中的内球水交换机制

Calculating geochemical reaction pathways--exploration of the inner-sphere water exchange mechanism in Al(H2O)6(3+)(aq) + nH2O with ab Initio calculations and molecular dynamics.

作者信息

Evans R James, Rustad James R, Casey William H

机构信息

Department of Geology, University of California, One Shields Avenue, Davis, California 95616, USA.

出版信息

J Phys Chem A. 2008 May 1;112(17):4125-40. doi: 10.1021/jp7116888. Epub 2008 Mar 27.

DOI:10.1021/jp7116888
PMID:18366199
Abstract

We have simulated exchange of inner-sphere and bulk water molecules for different sizes of Al3+(aq) clusters, Al(H2O)63+ + nH2O for n = 0, 1, 6, or 12, with ab initio and molecular dynamics simulations, in order to understand how robust the ab initio method is for identifying hydrolytic reaction pathways of particular importance to geochemistry. In contrast to many interfacial reactions, this particular elementary reaction is particularly simple and well-constrained by experiment. Nevertheless, we find that a rich array of parallel reaction pathways depend sensitively on the details of the solvation sphere and structure and that larger clusters are not necessarily better. Inner-sphere water exchange in Al3+(aq) may occur through two Langford-Gray dissociative pathways, one in which the incoming and outgoing waters are cis, the other in which they are trans to one another. A large majority of exchanges in the molecular dynamics simulations occurred via the trans mechanism, in contrast to the predictions of the ab initio method. In Al(H2O)63+ + H2O, the cis mechanism has a transition state of 84.3 kJ/mol, which is in good agreement with previous experimental and ab initio results, while the trans mechanism has only a saddle point with two negative frequencies, not a transition state, at 89.7 kJ/mol. In addition to the exchange mechanisms, dissociation pathways could be identified that were considerably lower in energy than experiment and varied considerably between 60 and 100 kJ/mol, depending on the particular geometry and cluster size, with no clear relation between the two. Ab initio calculations using large clusters with full second coordination spheres (n = 12) were unable to find dissociation or exchange transition states because the network of hydrogen bonds in the second coordination sphere was too rigid to accommodate the outgoing inner-sphere water. Our results indicate that caution should surround ab initio simulation of complicated dynamic processes such as hydrolysis, ion exchange, and interfacial reactions that involve several steps. Dynamic methods of simulation need to accompany static methods such as ab initio calculation, and it is best to consider simulated pathways as hypotheses to be tested experimentally rather than definitive properties of the reaction.

摘要

我们利用从头算和分子动力学模拟,针对不同大小的Al3+(aq)簇(即Al(H2O)63+ + nH2O,其中n = 0、1、6或12)模拟了内球层和本体水分子的交换,以了解从头算方法在识别对地球化学尤为重要的水解反应途径方面的稳健性如何。与许多界面反应不同,这个特定的基元反应特别简单且受到实验的严格限制。然而,我们发现一系列丰富的平行反应途径对溶剂化层的细节和结构敏感地依赖,而且更大的簇不一定更好。Al3+(aq)中的内球层水交换可能通过两种兰福德 - 格雷解离途径发生,一种是进入和离开的水分子是顺式的,另一种是它们彼此呈反式。与从头算方法的预测相反,分子动力学模拟中的大多数交换是通过反式机制发生的。在Al(H2O)63+ + H2O中,顺式机制的过渡态为84.3 kJ/mol,这与先前的实验和从头算结果吻合良好,而反式机制在89.7 kJ/mol处只有一个具有两个负频率的鞍点,而非过渡态。除了交换机制外,还能识别出解离途径,其能量比实验结果低得多,并且在60至100 kJ/mol之间因特定几何结构和簇大小而有很大变化,两者之间没有明显关系。使用具有完整第二配位层(n = 12)的大簇进行的从头算计算无法找到解离或交换过渡态,因为第二配位层中的氢键网络过于刚性,无法容纳离开的内球层水。我们的结果表明,对于诸如水解、离子交换和涉及多个步骤的界面反应等复杂动态过程的从头算模拟应谨慎对待。模拟的动态方法需要与诸如从头算计算等静态方法相结合,并且最好将模拟途径视为有待实验检验的假设,而非反应的确定性质。

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