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通过实验和理论方法相结合研究的一种脂肪族硼酸的结构和光谱性质。

Structural and spectroscopic properties of an aliphatic boronic acid studied by combination of experimental and theoretical methods.

作者信息

Cyrański Michał K, Jezierska Aneta, Klimentowska Paulina, Panek Jarosław J, Zukowska Grazyna Z, Sporzyński Andrzej

机构信息

Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland.

出版信息

J Chem Phys. 2008 Mar 28;128(12):124512. doi: 10.1063/1.2885053.

Abstract

Boronic acids have emerged as one of the most useful class of organoboron molecules, with application in synthesis, catalysis, analytical chemistry, supramolecular chemistry, biology, and medicine. In this study, the structural and spectroscopic properties of n-butylboronic acid were investigated using experimental and theoretical approaches. X-ray crystallography method provided structural information on the studied compound in the solid state. Infrared and Raman spectroscopy served as tools for the data collection on vibrational modes of the analyzed system. Car-Parrinello molecular dynamics simulations in solid state were carried out at 100 and 293 K to investigate an environmental and temperature influence on molecular properties of the n-butylboronic acid. Analysis of interatomic distances of atoms involved in the intermolecular hydrogen bond was performed to study the proton motion in the crystal. Subsequently, Fourier transform of autocorrelation functions of atomic velocities and dipole moment was applied to study the vibrational properties of the compound. In addition, the inclusion of quantum nature of proton motion was performed for O-H stretching vibrational mode by application of the envelope method for intermolecular hydrogen-bonded system. The second part of the computational study consists of simulations performed in vacuo. Monomeric and dimeric forms of the n-butylboronic acid were investigated using density functional theory and Moller-Plesset second-order perturbation method. The basis set superposition error was estimated. Finally, atoms in molecules (AIM) theory was applied to study electron density topology and properties of the intermolecular hydrogen bond. Successful reproduction of the molecular properties of the n-butylboronic acid by computational methodologies, presented in the manuscript, indicates the way for future studies of large boron-containing organic systems of importance in biology or materials science.

摘要

硼酸已成为最有用的有机硼分子类别之一,在合成、催化、分析化学、超分子化学、生物学和医学等领域都有应用。在本研究中,采用实验和理论方法研究了正丁基硼酸的结构和光谱性质。X射线晶体学方法提供了所研究化合物在固态下的结构信息。红外光谱和拉曼光谱用作分析系统振动模式数据收集的工具。在100K和293K下进行了固态的Car-Parrinello分子动力学模拟,以研究环境和温度对正丁基硼酸分子性质的影响。对分子间氢键中涉及的原子的原子间距离进行了分析,以研究晶体中的质子运动。随后,应用原子速度和偶极矩自相关函数的傅里叶变换来研究该化合物的振动性质。此外,通过对分子间氢键系统应用包络法,对O-H伸缩振动模式进行了质子运动量子性质的计算。计算研究的第二部分包括在真空中进行的模拟。使用密度泛函理论和Moller-Plesset二阶微扰方法研究了正丁基硼酸的单体和二聚体形式。估计了基组叠加误差。最后,应用分子中的原子(AIM)理论研究电子密度拓扑和分子间氢键的性质。本文中通过计算方法成功再现了正丁基硼酸的分子性质,为未来研究在生物学或材料科学中具有重要意义的大型含硼有机体系指明了方向。

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