Taskent Humeyra, Cho Jae-Hyun, Raleigh Daniel P
Department of Chemistry, State University of New York at Stony Brook, Stony Brook, NY 11794-3400, USA.
J Mol Biol. 2008 May 2;378(3):699-706. doi: 10.1016/j.jmb.2008.02.024. Epub 2008 Feb 20.
Characterization of the transition-state ensemble and the nature of the free-energy barrier for protein folding are areas of intense activity and some controversy. A key issue that has emerged in recent years is the width of the free-energy barrier and the susceptibility of the transition state to movement. Here we report denaturant-induced and temperature-dependent folding studies of a small mixed alpha-beta protein, the N-terminal domain of L9 (NTL9). The folding of NTL9 was determined using fluorescence-detected stopped-flow fluorescence measurements conducted at seven different temperatures between 11 and 40 degrees C. Plots of the log of the observed first-order rate constant versus denaturant concentration, "chevron plots," displayed the characteristic V shape expected for two-state folding. There was no hint of deviation from linearity even at the lowest denaturant concentrations. The relative position of the transition state, as judged by the Tanford beta parameter, beta(T), shifts towards the native state as the temperature is increased. Analysis of the temperature dependence of the kinetic and equilibrium m values indicates that the effect is due to significant movement of the transition state and also includes a contribution from temperature-dependent ground-state effects. Analysis of the Leffler plots, plots of Delta G versus Delta G degrees, and their cross-interaction parameters confirms the transition-state movement. Since the protein is destabilized at high temperature, the shift represents a temperature-dependent Hammond effect. This provides independent confirmation of a recent theoretical prediction. The magnitude of the temperature-denaturant cross-interaction parameter is larger for NTL9 than has been reported for the few other cases studied. The implications for temperature-dependent studies of protein folding are discussed.
蛋白质折叠的过渡态系综的表征以及自由能垒的性质是研究热点且存在一些争议。近年来出现的一个关键问题是自由能垒的宽度以及过渡态对移动的敏感性。在此,我们报告了对一种小型α-β混合蛋白——L9的N端结构域(NTL9)进行的变性剂诱导和温度依赖性折叠研究。通过在11至40摄氏度之间的七个不同温度下进行荧光检测的停流荧光测量来确定NTL9的折叠情况。观察到的一级速率常数的对数与变性剂浓度的关系图,即“V形图”,呈现出两态折叠预期的特征V形。即使在最低变性剂浓度下也没有偏离线性的迹象。根据Tanfordβ参数β(T)判断,过渡态的相对位置随着温度升高向天然态移动。对动力学和平衡态m值的温度依赖性分析表明,这种效应是由于过渡态的显著移动,并且还包括温度依赖性基态效应的贡献。对Leffler图(ΔG与ΔG°的关系图)及其交叉相互作用参数的分析证实了过渡态的移动。由于该蛋白质在高温下不稳定,这种移动代表了温度依赖性的哈蒙德效应。这为最近的理论预测提供了独立验证。NTL9的温度-变性剂交叉相互作用参数的大小比其他少数已研究案例所报道的要大。文中讨论了其对蛋白质折叠温度依赖性研究的意义。