Karpinski Pawel, Ramsey David, Grzebieniak Zygmunt, Sasiadek Maria M, Blin Nikolaus
Departament of Genetics, Wroclaw Medical University, ul. Marcinkowskiego 1, 50-368 Wroclaw, Poland.
Mol Cancer Res. 2008 Apr;6(4):585-91. doi: 10.1158/1541-7786.MCR-07-2158.
The CpG island methylator phenotype (CIMP), characterized by an exceptionally high frequency of methylation of discrete CpG islands, is observed in 18% to 25% of sporadic colorectal cancers. Another hypermethylation pattern found in colorectal cancers, termed long-range epigenetic silencing, is associated with DNA/histone methylation in three distinct gene clusters at chromosome 2q14.2, showing that DNA hypermethylation can span larger chromosomal domains and lead to the silencing of flanking, unmethylated genes. We investigated whether these two phenotypes are interrelated in colorectal cancers. The CIMP status of 148 sporadic colorectal cancers was determined by methylation-specific PCR. We determined the BRAF V600E mutation by mutant allele-specific PCR amplification. The methylation status of the MLH1 gene and of three CpG islands (EN1, SCTR, and INHBB), corresponding to three distinct clusters along 2q14.2, was determined by methylation-specific PCR. The average number of sites showing methylation in CIMP+ tumors was 2.21, compared with 1.22 for CIMP- individuals, and this difference was highly significant (P = 3.6 x 10(-8), Mann-Whitney test). Moreover, all CIMP+ tumors showed hypermethylation of at least one of these loci, in contrast to CIMP- tumors, where 18 (16%) samples remained unmethylated. The mean number of simultaneously hypermethylated CpG islands at 2q14.2 differs significantly between CIMP- and CIMP+ tumors, suggesting varying effects of domain silencing in this region. Given that the number of hypermethylated loci at 2q14.2 likely affects the range of silenced flanking genes, high frequency of simultaneous hypermethylation of three CpG islands (EN1, SCTR, and INHBB) may have potential influence on specific characteristics of CIMP+ colorectal cancers.
CpG岛甲基化表型(CIMP)的特征是离散CpG岛的甲基化频率异常高,在18%至25%的散发性结直肠癌中可观察到。在结直肠癌中发现的另一种高甲基化模式,称为长程表观遗传沉默,与2号染色体q14.2上三个不同基因簇中的DNA/组蛋白甲基化有关,这表明DNA高甲基化可以跨越更大的染色体区域并导致侧翼未甲基化基因的沉默。我们研究了这两种表型在结直肠癌中是否相互关联。通过甲基化特异性PCR确定了148例散发性结直肠癌的CIMP状态。通过突变等位基因特异性PCR扩增确定BRAF V600E突变。通过甲基化特异性PCR确定MLH1基因以及与2q14.2上三个不同簇相对应的三个CpG岛(EN1、SCTR和INHBB)的甲基化状态。CIMP+肿瘤中显示甲基化的位点平均数为2.21,而CIMP-个体为1.22,这种差异非常显著(P = 3.6 x 10(-8),Mann-Whitney检验)。此外,所有CIMP+肿瘤均显示这些位点中至少有一个发生高甲基化,与之形成对比的是,CIMP-肿瘤中有18个(16%)样本仍未甲基化。CIMP-和CIMP+肿瘤在2q14.2处同时发生高甲基化的CpG岛平均数存在显著差异,表明该区域的结构域沉默存在不同影响。鉴于2q14.2处高甲基化位点的数量可能影响侧翼沉默基因的范围,三个CpG岛(EN1、SCTR和INHBB)同时发生高甲基化的高频率可能对CIMP+结直肠癌的特定特征具有潜在影响。