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由Rhp51重组酶和两种介导因子介导的DNA链交换的重建

Reconstitution of DNA strand exchange mediated by Rhp51 recombinase and two mediators.

作者信息

Kurokawa Yumiko, Murayama Yasuto, Haruta-Takahashi Nami, Urabe Itaru, Iwasaki Hiroshi

机构信息

Division of Molecular and Cellular Biology, International Graduate School of Arts and Sciences, Yokohama City University, Yokohama, Kanagawa, Japan.

出版信息

PLoS Biol. 2008 Apr 15;6(4):e88. doi: 10.1371/journal.pbio.0060088.

Abstract

In the fission yeast Schizosaccharomyces pombe, genetic evidence suggests that two mediators, Rad22 (the S. pombe Rad52 homolog) and the Swi5-Sfr1 complex, participate in a common pathway of Rhp51 (the S. pombe Rad51 homolog)-mediated homologous recombination (HR) and HR repair. Here, we have demonstrated an in vitro reconstitution of the central step of DNA strand exchange during HR. Our system consists entirely of homogeneously purified proteins, including Rhp51, the two mediators, and replication protein A (RPA), which reflects genetic requirements in vivo. Using this system, we present the first robust biochemical evidence that concerted action of the two mediators directs the loading of Rhp51 onto single-stranded DNA (ssDNA) precoated with RPA. Dissection of the reaction reveals that Rad22 overcomes the inhibitory effect of RPA on Rhp51-Swi5-Sfr1-mediated strand exchange. In addition, Rad22 negates the requirement for a strict order of protein addition to the in vitro system. However, despite the presence of Rad22, Swi5-Sfr1 is still essential for strand exchange. Importantly, Rhp51, but neither Rad22 nor the Swi5-Sfr1 mediator, is the factor that displaces RPA from ssDNA. Swi5-Sfr1 stabilizes Rhp51-ssDNA filaments in an ATP-dependent manner, and this stabilization is correlated with activation of Rhp51 for the strand exchange reaction. Rad22 alone cannot activate the Rhp51 presynaptic filament. AMP-PNP, a nonhydrolyzable ATP analog, induces a similar stabilization of Rhp51, but this stabilization is independent of Swi5-Sfr1. However, hydrolysis of ATP is required for processive strand transfer, which results in the formation of a long heteroduplex. Our in vitro reconstitution system has revealed that the two mediators have indispensable, but distinct, roles for mediating Rhp51 loading onto RPA-precoated ssDNA.

摘要

在裂殖酵母粟酒裂殖酵母中,遗传学证据表明,两种介导因子Rad22(粟酒裂殖酵母Rad52同源物)和Swi5 - Sfr1复合物参与了Rhp51(粟酒裂殖酵母Rad51同源物)介导的同源重组(HR)和HR修复的共同途径。在此,我们展示了HR过程中DNA链交换核心步骤的体外重建。我们的系统完全由均一纯化的蛋白质组成,包括Rhp51、这两种介导因子和复制蛋白A(RPA),这反映了体内的遗传需求。利用该系统,我们提供了首个有力的生化证据,即这两种介导因子的协同作用指导Rhp51加载到预先被RPA包被的单链DNA(ssDNA)上。对该反应的剖析表明,Rad22克服了RPA对Rhp51 - Swi5 - Sfr1介导的链交换的抑制作用。此外,Rad22消除了体外系统中对蛋白质添加严格顺序的要求。然而,尽管存在Rad22,Swi5 - Sfr1对于链交换仍然是必不可少的。重要的是,Rhp51是将RPA从ssDNA上置换下来的因子,而Rad22和Swi5 - Sfr1介导因子都不是。Swi5 - Sfr1以ATP依赖的方式稳定Rhp51 - ssDNA细丝,并且这种稳定与Rhp51对链交换反应的激活相关。单独的Rad22不能激活Rhp51突触前细丝。AMP - PNP,一种不可水解的ATP类似物,诱导Rhp51产生类似的稳定,但这种稳定不依赖于Swi5 - Sfr1。然而,进行性链转移需要ATP水解,这导致形成长的异源双链体。我们的体外重建系统揭示了这两种介导因子在介导Rhp51加载到RPA包被的ssDNA上具有不可或缺但又不同的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d290/2689689/9151af561a61/pbio.0060088.g001.jpg

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