Kapetanaki Sofia M, Field Sarah J, Hughes Ross J L, Watmough Nicholas J, Liebl Ursula, Vos Marten H
Laboratoire d'Optique et Biosciences, CNRS, Ecole Polytechnique, F-91128 Palaiseau, France; INSERM U696, F-91128 Palaiseau, France.
Biochim Biophys Acta. 2008 Jul-Aug;1777(7-8):919-24. doi: 10.1016/j.bbabio.2008.03.012. Epub 2008 Mar 29.
The active site of nitric oxide reductase from Paracoccus denitrificans contains heme and non-heme iron and is evolutionarily related to heme-copper oxidases. The CO and NO dynamics in the active site were investigated using ultrafast transient absorption spectroscopy. We find that, upon photodissociation from the active site heme, 20% of the CO rebinds in 170 ps, suggesting that not all the CO transiently binds to the non-heme iron. The remaining 80% does not rebind within 4 ns and likely migrates out of the active site without transient binding to the non-heme iron. Rebinding of NO to ferrous heme takes place in approximately 13 ps. Our results reveal that heme-ligand recombination in this enzyme is considerably faster than in heme-copper oxidases and are consistent with a more confined configuration of the active site.
反硝化副球菌一氧化氮还原酶的活性位点含有血红素和非血红素铁,在进化上与血红素-铜氧化酶相关。利用超快瞬态吸收光谱研究了活性位点中的一氧化碳(CO)和一氧化氮(NO)动力学。我们发现,从活性位点血红素光解离后,20%的CO在170皮秒内重新结合,这表明并非所有的CO都短暂结合到非血红素铁上。其余80%在4纳秒内未重新结合,可能在未短暂结合到非血红素铁的情况下迁移出活性位点。NO与亚铁血红素的重新结合大约在13皮秒内发生。我们的结果表明,该酶中血红素-配体的重组比血红素-铜氧化酶中的重组要快得多,并且与活性位点更受限的构型一致。