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利用从量子力学计算获得的非球形原子密度函数进行X射线结构精修。

X-ray structure refinement using aspherical atomic density functions obtained from quantum-mechanical calculations.

作者信息

Jayatilaka Dylan, Dittrich Birger

机构信息

Chemistry, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Australia.

出版信息

Acta Crystallogr A. 2008 May;64(Pt 3):383-93. doi: 10.1107/S0108767308005709. Epub 2008 Apr 18.

Abstract

An approach is outlined for X-ray structure refinement using atomic density fragments obtained by Hirshfeld partitioning of quantum-mechanical density fragments. Results are presented for crystal structure refinements of urea and benzene using these 'Hirshfeld atoms'. Using this procedure, the quantum-mechanical non-spherical electron density is taken into account in the structural model based on the conformation found in the crystal. Contrary to current consensus in structure refinement, the anisotropic displacement parameters of H atoms can be reproduced from neutron diffraction measurements simply from a least-squares fit using the Hirshfeld atoms derived from the BLYP level of theory and including a simple point-charge model to treat the crystal environment.

摘要

概述了一种使用通过量子力学密度片段的Hirshfeld划分获得的原子密度片段进行X射线结构精修的方法。给出了使用这些“Hirshfeld原子”对尿素和苯晶体结构精修的结果。采用该程序,基于晶体中发现的构象,在结构模型中考虑了量子力学非球形电子密度。与当前结构精修的共识相反,H原子的各向异性位移参数可以简单地通过使用从BLYP理论水平导出的Hirshfeld原子并包括一个简单的点电荷模型来处理晶体环境,从中子衍射测量中通过最小二乘法拟合得到。

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