Suppr超能文献

考虑生物地理学中系统发育的不确定性:一种用于鸫科(雀形目:鸫属)扩散-隔离分化分析的贝叶斯方法。

Accounting for phylogenetic uncertainty in biogeography: a Bayesian approach to dispersal-vicariance analysis of the thrushes (Aves: Turdus).

作者信息

Nylander Johan A A, Olsson Urban, Alström Per, Sanmartín Isabel

机构信息

School of Computational Science, Florida State University, Tallahassee, Florida 32306, USA.

出版信息

Syst Biol. 2008 Apr;57(2):257-68. doi: 10.1080/10635150802044003.

Abstract

The phylogeny of the thrushes (Aves: Turdus) has been difficult to reconstruct due to short internal branches and lack of node support for certain parts of the tree. Reconstructing the biogeographic history of this group is further complicated by the fact that current implementations of biogeographic methods, such as dispersal-vicariance analysis (DIVA; Ronquist, 1997), require a fully resolved tree. Here, we apply a Bayesian approach to dispersal-vicariance analysis that accounts for phylogenetic uncertainty and allows a more accurate analysis of the biogeographic history of lineages. Specifically, ancestral area reconstructions can be presented as marginal distributions, thus displaying the underlying topological uncertainty. Moreover, if there are multiple optimal solutions for a single node on a certain tree, integrating over the posterior distribution of trees often reveals a preference for a narrower set of solutions. We find that despite the uncertainty in tree topology, ancestral area reconstructions indicate that the Turdus clade originated in the eastern Palearctic during the Late Miocene. This was followed by an early dispersal to Africa from where a worldwide radiation took place. The uncertainty in tree topology and short branch lengths seems to indicate that this radiation took place within a limited time span during the Late Pliocene. The results support the role of Africa as a probable source area for intercontinental dispersals as suggested for other passerine groups, including basal diversification within the songbird tree.

摘要

由于内部支系较短且树的某些部分缺乏节点支持,画眉科(雀形目:鸫属)的系统发育一直难以重建。生物地理方法的当前实现方式,如扩散-隔离分化分析(DIVA;Ronquist,1997),需要一个完全解析的树,这使得重建该类群的生物地理历史更加复杂。在这里,我们应用一种贝叶斯方法进行扩散-隔离分化分析,该方法考虑了系统发育的不确定性,并能更准确地分析谱系的生物地理历史。具体来说,祖先区域重建可以表示为边际分布,从而展示潜在的拓扑不确定性。此外,如果某棵树上单个节点有多个最优解,对树的后验分布进行积分通常会显示出对一组更窄解的偏好。我们发现,尽管树拓扑存在不确定性,但祖先区域重建表明,鸫属分支起源于晚中新世的东古北区。随后早期扩散到非洲,从那里发生了一次全球范围的辐射。树拓扑的不确定性和较短的分支长度似乎表明,这次辐射发生在上新世晚期的有限时间跨度内。结果支持了非洲作为洲际扩散可能源区的作用,这与其他雀形目类群的情况一致,包括鸣禽树中的基部多样化。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验