Martens Lennart, Jones Phil, Côté Richard
EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge.
Curr Protoc Bioinformatics. 2008 Mar;Chapter 13:Unit 13.8. doi: 10.1002/0471250953.bi1308s21.
The Proteomics Identifications Database (PRIDE) is a public data repository designed to store, disseminate, and analyze mass spectrometry based proteomics datasets. The PRIDE database can accommodate any level of detailed metadata about the submitted results, which can be queried, explored, viewed, or downloaded via the PRIDE Web interface. The PRIDE database also provides a simple, yet powerful, access control mechanism that fully supports confidential peer-reviewing of data related to a manuscript, ensuring that these results remain invisible to the general public while allowing referees and journal editors anonymized access to the data. This unit describes in detail the functionality that PRIDE provides with regards to searching, viewing, and comparing the available data, as well as different options for submitting data to PRIDE.
蛋白质组学鉴定数据库(PRIDE)是一个公共数据存储库,旨在存储、传播和分析基于质谱的蛋白质组学数据集。PRIDE数据库可以容纳关于提交结果的任何详细程度的元数据,这些元数据可以通过PRIDE网络界面进行查询、浏览、查看或下载。PRIDE数据库还提供了一种简单但功能强大的访问控制机制,该机制完全支持对手稿相关数据进行保密的同行评审,确保这些结果对公众不可见,同时允许审稿人和期刊编辑匿名访问数据。本单元详细描述了PRIDE在搜索、查看和比较可用数据方面提供的功能,以及将数据提交到PRIDE的不同选项。