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[寄生虫学研究中的基因表达序列分析]

[Serial analysis of gene expression in parasitological research].

作者信息

Li Qiao-Li, Zhang Zhi-Ming, Qiao Zhong-Dong

机构信息

College of Life Science & Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China.

出版信息

Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi. 2007 Dec;25(6):504-9.

Abstract

Serial analysis of gene expression (SAGE) is a powerful high-throughput experimental technique that allows rapid, quantitative analysis of global gene expression in eukaryotic organisms. A short sequence taq (10-14 bp), which is defined by an anchoring enzyme site at a fixed distance from polyA tail, contains sufficient information to identify mRNA transcript from which it originates. The taqs are ligated to obtain concatemers that are cloned into a plasmid vector for sequencing. The identification and abundance of mRNA can be observed through bioinformatics and statistical analysis of a given tag. SAGE is not only applied in obtaining global profile of gene expression in a given cell or tissue, but also help identify a set of specific genes to the cellular conditions by comparing the profiles constructed for a pair of cells that are kept at different conditions. This review covers a general introduction of SAGE, its protocol, methodological evolution and applications in parasite biology.

摘要

基因表达序列分析(SAGE)是一种强大的高通量实验技术,可对真核生物中的全局基因表达进行快速、定量分析。一个短序列标签(10 - 14 bp),由距polyA尾固定距离处的锚定酶切位点定义,包含足以识别其来源的mRNA转录本的信息。这些标签被连接以获得串联体,然后克隆到质粒载体中进行测序。通过对给定标签的生物信息学和统计分析,可以观察到mRNA的识别和丰度。SAGE不仅应用于获取给定细胞或组织中的基因表达全局概况,还通过比较在不同条件下培养的一对细胞构建的概况,帮助识别一组与细胞条件相关的特定基因。本综述涵盖了SAGE的一般介绍、其方案、方法学演变及其在寄生虫生物学中的应用。

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