Kornilov V V, Rabinovich A L, Balabaev N K, Bessonov V V
Biofizika. 2008 Jan-Feb;53(1):84-92.
Molecular dynamics (MD) computer simulations of five different hydrated unsaturated phosphatidylcholine lipid bilayers built up by 18:0/18:1(n-9)cis PC, 18:0/18:2(n-6)cis PC, 18:0/18:3(n-3)cis PC, 18:0/20:4(n-6)cis PC, and 18:0/22:6(n-3)cis PC molecules with 40 mol% cholesterol, and the same five pure phosphatidylcholine bilayers have been performed at 303 K. The simulation box of a lipid bilayer contained 96 phosphatidylcholines, 64 cholesterols, and 3840 water molecules (48 phosphatidylcholine molecules and 32 cholesterols per layer and 24 water molecules per phospholipid or cholesterol in each case). The lateral self-diffusion coefficients of the lipids in these systems and mass density profiles with respect to the bilayer normal have been analyzed. It has been found that the lateral diffusion coefficients of phosphatidylcholine molecules increase with increasing number of double bonds in one of the lipid chains, both in pure bilayers and in bilayers with cholesterol. It has been found as well that the lateral diffusion coefficient of phosphatidylcholine molecules of a lipid bilayer with 40 mol% cholesterol is smaller than that for the corresponding pure phosphatidylcholine bilayer.
在303 K下,对由18:0/18:1(n - 9)顺式PC、18:0/18:2(n - 6)顺式PC、18:0/18:3(n - 3)顺式PC、18:0/20:4(n - 6)顺式PC和18:0/22:6(n - 3)顺式PC分子与40 mol%胆固醇构成的五种不同的水合不饱和磷脂酰胆碱脂质双层,以及相同的五种纯磷脂酰胆碱双层进行了分子动力学(MD)计算机模拟。脂质双层的模拟盒包含96个磷脂酰胆碱、64个胆固醇和3840个水分子(每层48个磷脂酰胆碱分子和32个胆固醇,每种情况下每个磷脂或胆固醇有24个水分子)。分析了这些系统中脂质的横向自扩散系数以及相对于双层法线的质量密度分布。已发现,无论是在纯双层中还是在含有胆固醇的双层中,磷脂酰胆碱分子的横向扩散系数都随着脂质链之一中双键数量的增加而增加。还发现,含有40 mol%胆固醇的脂质双层中磷脂酰胆碱分子的横向扩散系数小于相应的纯磷脂酰胆碱双层。