Gomulski Ludvik M, Dimopoulos George, Xi Zhiyong, Soares Marcelo B, Bonaldo Maria F, Malacrida Anna R, Gasperi Giuliano
Department of Animal Biology, University of Pavia, Piazza Botta 9, Pavia 27100, Italy.
BMC Genomics. 2008 May 23;9:243. doi: 10.1186/1471-2164-9-243.
The medfly, Ceratitis capitata, is a highly invasive agricultural pest that has become a model insect for the development of biological control programs. Despite research into the behavior and classical and population genetics of this organism, the quantity of sequence data available is limited. We have utilized an expressed sequence tag (EST) approach to obtain detailed information on transcriptome signatures that relate to a variety of physiological systems in the medfly; this information emphasizes on reproduction, sex determination, and chemosensory perception, since the study was based on normalized cDNA libraries from embryos and adult heads.
A total of 21,253 high-quality ESTs were obtained from the embryo and head libraries. Clustering analyses performed separately for each library resulted in 5201 embryo and 6684 head transcripts. Considering an estimated 19% overlap in the transcriptomes of the two libraries, they represent about 9614 unique transcripts involved in a wide range of biological processes and molecular functions. Of particular interest are the sequences that share homology with Drosophila genes involved in sex determination, olfaction, and reproductive behavior. The medfly transformer2 (tra2) homolog was identified among the embryonic sequences, and its genomic organization and expression were characterized.
The sequences obtained in this study represent the first major dataset of expressed genes in a tephritid species of agricultural importance. This resource provides essential information to support the investigation of numerous questions regarding the biology of the medfly and other related species and also constitutes an invaluable tool for the annotation of complete genome sequences. Our study has revealed intriguing findings regarding the transcript regulation of tra2 and other sex determination genes, as well as insights into the comparative genomics of genes implicated in chemosensory reception and reproduction.
地中海实蝇(Ceratitis capitata)是一种极具入侵性的农业害虫,已成为生物防治计划开发的模式昆虫。尽管对该生物的行为、经典遗传学和群体遗传学进行了研究,但可用的序列数据量有限。我们利用表达序列标签(EST)方法来获取与地中海实蝇各种生理系统相关的转录组特征的详细信息;由于该研究基于胚胎和成虫头部的标准化cDNA文库,因此这些信息主要集中在生殖、性别决定和化学感受方面。
从胚胎文库和头部文库共获得了21253条高质量的EST。对每个文库分别进行聚类分析,得到5201个胚胎转录本和6684个头部转录本。考虑到两个文库转录组估计有19%的重叠,它们代表了约9614个参与广泛生物过程和分子功能的独特转录本。特别有趣的是与果蝇中参与性别决定、嗅觉和生殖行为的基因具有同源性的序列。在地中海实蝇胚胎序列中鉴定出了transformer2(tra2)同源物,并对其基因组结构和表达进行了表征。
本研究获得的序列代表了一种具有农业重要性的实蝇科物种中表达基因的首个主要数据集。该资源为支持对地中海实蝇和其他相关物种生物学的众多问题进行研究提供了重要信息,也是注释完整基因组序列的宝贵工具。我们的研究揭示了关于tra2和其他性别决定基因转录调控的有趣发现,以及对参与化学感受和生殖的基因比较基因组学的见解。