Agarwal Vipin, Reif Bernd
Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Campus Berlin-Buch, Robert-Rössle-Strase 10, D-13125 Berlin, Germany.
J Magn Reson. 2008 Sep;194(1):16-24. doi: 10.1016/j.jmr.2008.05.021. Epub 2008 Jun 20.
NMR studies involving perdeuterated proteins focus in general on exchangeable amide protons. However, non-exchangeable sites contain as well a small amount of protons as the employed precursors for protein biosynthesis are not completely proton depleted. The degree of methyl group protonation is in the order of 9% for CD2H using >97% deuterium enriched glucose. We show in this manuscript that this small amount of residual protonation is sufficient to perform 2D and 3D MAS solid-state NMR experiments. In particular, we suggest a HCCH-TOBSY type experiment which we successfully employ to assign the methyl resonances in aliphatic side chains in a perdeuterated sample of the SH3 domain of chicken alpha-spectrin.
涉及全氘代蛋白质的核磁共振(NMR)研究一般聚焦于可交换酰胺质子。然而,由于用于蛋白质生物合成的前体并非完全不含质子,不可交换位点也含有少量质子。使用氘富集度>97%的葡萄糖时,CD2H的甲基质子化程度约为9%。我们在本论文中表明,这少量的残留质子化足以进行二维和三维魔角旋转(MAS)固态NMR实验。特别是,我们提出了一种HCCH-TOBSY类型的实验,并成功地将其用于在鸡α-血影蛋白SH3结构域的全氘代样品中归属脂肪族侧链中的甲基共振。