Takayama Yuki, Werbeck Nicolas D, Komori Hirofumi, Morita Kumiko, Ozawa Kiyoshi, Higuchi Yoshiki, Akutsu Hideo
Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Japan.
Biochemistry. 2008 Sep 9;47(36):9405-15. doi: 10.1021/bi8005708. Epub 2008 Aug 15.
Tetraheme cytochrome c 3 (cyt c 3) exhibits extremely low reduction potentials and unique properties. Since axial ligands should be the most important factors for this protein, every axial histidine of Desulfovibrio vulgaris Miyazaki F cyt c 3 was replaced with methionine, one by one. On mutation at the fifth ligand, the relevant heme could not be linked to the polypeptide, revealing the essential role of the fifth histidine in heme linking. The fifth histidine is the key residue in the structure formation and redox regulation of a c-type cytochrome. A crystal structure has been obtained for only H25M cyt c 3. The overall structure was not affected by the mutation except for the sixth methionine coordination at heme 3. NMR spectra revealed that each mutated methionine is coordinated to the sixth site of the relevant heme in the reduced state, while ligand conversion takes place at hemes 1 and 4 during oxidation at pH 7. The replacement of the sixth ligand with methionine caused an increase in the reduction potential of the mutated heme of 222-244 mV. The midpoint potential of a triheme H52M cyt c 3 is higher than that of the wild type by approximately 50 mV, suggesting a contribution of the tetraheme architecture to the lowering of the reduction potentials. The hydrogen bonding of Thr24 with an axial ligand induces a decrease in reduction potential of approximately 50 mV. In conclusion, the bis-histidine coordination is strategically essential for the structure formation and the extremely low reduction potential of cyt c 3.
四血红素细胞色素c3(cyt c3)具有极低的还原电位和独特的性质。由于轴向配体应该是影响该蛋白质的最重要因素,因此将嗜硫小红卵菌宫崎F株cyt c3的每个轴向组氨酸逐一替换为甲硫氨酸。在第五个配体发生突变时,相关血红素无法与多肽相连,这揭示了第五个组氨酸在血红素连接中的关键作用。第五个组氨酸是c型细胞色素结构形成和氧化还原调节中的关键残基。目前仅获得了H25M cyt c3的晶体结构。除了血红素3处的第六个甲硫氨酸配位外,整体结构不受突变影响。核磁共振光谱表明,每个突变的甲硫氨酸在还原状态下与相关血红素的第六个位点配位,而在pH 7氧化过程中,血红素1和4发生配体转换。用甲硫氨酸取代第六个配体导致突变血红素的还原电位增加222 - 244 mV。三血红素H52M cyt c3的中点电位比野生型高约50 mV,这表明四血红素结构对还原电位的降低有贡献。苏氨酸24与轴向配体的氢键作用导致还原电位降低约50 mV。总之,双组氨酸配位对于cyt c3的结构形成和极低的还原电位在策略上至关重要。