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小核RNA系统发育变异的有限功能等效性:具有改变的分支点互补性的酵母U2 RNA抑制剪接并产生显性致死表型。

Limited functional equivalence of phylogenetic variation in small nuclear RNA: yeast U2 RNA with altered branchpoint complementarity inhibits splicing and produces a dominant lethal phenotype.

作者信息

Miraglia L, Seiwert S, Igel A H, Ares M

机构信息

Sinsheimer Laboratories, University of California, Santa Cruz 95064.

出版信息

Proc Natl Acad Sci U S A. 1991 Aug 15;88(16):7061-5. doi: 10.1073/pnas.88.16.7061.

DOI:10.1073/pnas.88.16.7061
PMID:1871121
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC52233/
Abstract

U2 is a highly conserved small nuclear RNA essential for pre-mRNA splicing in mammals and yeast and for trans-splicing in trypanosomes. To test the function of variant U2 RNA structures from different organisms, we conducted phylogenetic exchanges of U2 domains. Replacing nucleotides 1-120 of yeast U2 with the corresponding region of human U2 generates a U2 RNA that is correctly folded and functions in yeast. In contrast, replacement of the branchpoint interaction region of yeast U2 with the corresponding region from trypanosome is dominant lethal. Using a GAL-U2 promoter fusion, we show that the dominant phenotype can be made conditional and that the accumulation of mutant U2 is followed rapidly by inhibition of nuclear pre-mRNA splicing. The results suggest that U2 small nuclear ribonucleoprotein particles normally participate in stable complexes with a limiting splicing factor prior to formation of U2-intron branchpoint base pairs.

摘要

U2是一种高度保守的小核RNA,对哺乳动物和酵母中的前体mRNA剪接以及锥虫中的反式剪接至关重要。为了测试来自不同生物体的变体U2 RNA结构的功能,我们进行了U2结构域的系统发育交换。用人类U2的相应区域替换酵母U2的核苷酸1-120会产生一种在酵母中正确折叠并发挥功能的U2 RNA。相比之下,用锥虫的相应区域替换酵母U2的分支点相互作用区域具有显性致死性。使用GAL-U2启动子融合,我们表明显性表型可以是条件性的,并且突变U2的积累会迅速导致核前体mRNA剪接受到抑制。结果表明,U2小核糖核蛋白颗粒通常在形成U2-内含子分支点碱基对之前与一种有限的剪接因子参与稳定复合物的形成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/188a/52233/1cb6f5a0e735/pnas01066-0174-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/188a/52233/946528837ff0/pnas01066-0172-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/188a/52233/722d4ca4f047/pnas01066-0172-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/188a/52233/ed4fdfb7c299/pnas01066-0173-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/188a/52233/a7171c6678e3/pnas01066-0173-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/188a/52233/7dd4de642a0e/pnas01066-0174-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/188a/52233/1cb6f5a0e735/pnas01066-0174-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/188a/52233/946528837ff0/pnas01066-0172-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/188a/52233/722d4ca4f047/pnas01066-0172-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/188a/52233/ed4fdfb7c299/pnas01066-0173-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/188a/52233/a7171c6678e3/pnas01066-0173-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/188a/52233/7dd4de642a0e/pnas01066-0174-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/188a/52233/1cb6f5a0e735/pnas01066-0174-b.jpg

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Limited functional equivalence of phylogenetic variation in small nuclear RNA: yeast U2 RNA with altered branchpoint complementarity inhibits splicing and produces a dominant lethal phenotype.小核RNA系统发育变异的有限功能等效性:具有改变的分支点互补性的酵母U2 RNA抑制剪接并产生显性致死表型。
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Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA.酵母中mRNA剪接过程中对TACTAAC框的识别涉及与U2样snRNA的碱基配对。
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A new U2 RNA secondary structure provided by phylogenetic analysis of trypanosomatid U2 RNAs.通过对锥虫U2 RNA进行系统发育分析得到的一种新的U2 RNA二级结构。
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本文引用的文献

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Rapid and efficient site-specific mutagenesis without phenotypic selection.无需表型筛选的快速高效位点特异性诱变。
Proc Natl Acad Sci U S A. 1985 Jan;82(2):488-92. doi: 10.1073/pnas.82.2.488.
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Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA.酵母中mRNA剪接过程中对TACTAAC框的识别涉及与U2样snRNA的碱基配对。
Cell. 1987 Apr 24;49(2):229-39. doi: 10.1016/0092-8674(87)90564-2.
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U2 RNA from yeast is unexpectedly large and contains homology to vertebrate U4, U5, and U6 small nuclear RNAs.
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CUS2, a yeast homolog of human Tat-SF1, rescues function of misfolded U2 through an unusual RNA recognition motif.CUS2是人类Tat-SF1的酵母同源物,它通过一种不同寻常的RNA识别基序挽救错误折叠的U2的功能。
Mol Cell Biol. 1998 Sep;18(9):5000-9. doi: 10.1128/MCB.18.9.5000.
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Depletion of yeast RNase III blocks correct U2 3' end formation and results in polyadenylated but functional U2 snRNA.酵母核糖核酸酶III的缺失会阻碍U2 3'端的正确形成,并导致多聚腺苷酸化但功能正常的U2小核核糖核酸。
EMBO J. 1998 Jul 1;17(13):3738-46. doi: 10.1093/emboj/17.13.3738.
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Construction of an in vivo-regulated U6 snRNA transcription unit as a tool to study U6 function.构建体内调控的U6小核RNA转录单元作为研究U6功能的工具。
RNA. 1998 Feb;4(2):231-8.
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Alternative 3'-end processing of U5 snRNA by RNase III.核糖核酸酶III对U5小核仁RNA进行替代性3'端加工。
Genes Dev. 1997 Oct 15;11(20):2741-51. doi: 10.1101/gad.11.20.2741.
10
The branchpoint residue is recognized during commitment complex formation before being bulged out of the U2 snRNA-pre-mRNA duplex.分支点残基在剪接前体复合物形成过程中被识别,然后从U2 snRNA-前体mRNA双链体中凸起。
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酵母中的U2 RNA出人意料地大,并且与脊椎动物的U4、U5和U6小核RNA具有同源性。
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4
Alternative branch points are selected during splicing of a yeast pre-mRNA in mammalian and yeast extracts.在哺乳动物和酵母提取物中对酵母前体mRNA进行剪接时,会选择其他分支点。
Proc Natl Acad Sci U S A. 1986 Apr;83(7):2022-6. doi: 10.1073/pnas.83.7.2022.
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Presplicing complex formation requires two proteins and U2 snRNP.剪接前复合体的形成需要两种蛋白质和U2小核核糖核蛋白。
Genes Dev. 1988 Sep;2(9):1155-67. doi: 10.1101/gad.2.9.1155.
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Early commitment of yeast pre-mRNA to the spliceosome pathway.酵母前体mRNA对剪接体途径的早期定向
Mol Cell Biol. 1988 Sep;8(9):3755-60. doi: 10.1128/mcb.8.9.3755-3760.1988.
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The role of the mammalian branchpoint sequence in pre-mRNA splicing.哺乳动物分支点序列在mRNA前体剪接中的作用。
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Two conserved domains of yeast U2 snRNA are separated by 945 nonessential nucleotides.酵母U2小核RNA的两个保守结构域被945个非必需核苷酸隔开。
Cell. 1988 Oct 7;55(1):41-8. doi: 10.1016/0092-8674(88)90007-4.
9
Internal sequences that distinguish yeast from metazoan U2 snRNA are unnecessary for pre-mRNA splicing.区分酵母与后生动物U2 snRNA的内部序列对于前体mRNA剪接并非必需。
Nature. 1988 Aug 4;334(6181):450-3. doi: 10.1038/334450a0.
10
Splicing of SV40 early pre-mRNA to large T and small t mRNAs utilizes different patterns of lariat branch sites.SV40早期前体mRNA剪接为大T和小t mRNA利用了不同模式的套索分支位点。
Cell. 1987 Jul 17;50(2):227-36. doi: 10.1016/0092-8674(87)90218-2.