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水稻矮缩病毒三聚体衣壳蛋白的多形结构,可形成外衣壳和管状晶体。

Pleomorphic configuration of the trimeric capsid proteins of Rice dwarf virus that allows formation of both the outer capsid and tubular crystals.

作者信息

Iwasaki Kenji, Miyazaki Naoyuki, Hammar Lena, Zhu Yafeng, Omura Toshihiro, Wu Bomu, Sjöborg Fredrik, Yonekura Koji, Murata Kazuyoshi, Namba Keiichi, Caspar Donald L, Fujiyoshi Yoshinori, Cheng R Holland

机构信息

Department of Biophysical Engineering, Faculty of Engineering Science, Osaka University, Toyonaka 560-0043, Japan.

出版信息

J Mol Biol. 2008 Oct 31;383(1):252-65. doi: 10.1016/j.jmb.2008.08.021. Epub 2008 Aug 22.

Abstract

In the double-shelled capsid of Phytoreovirus, the outer capsid attaches firmly to the 3-fold axes of the T=1 core. It then forms a T=13 lattice via lateral interactions among the P8 trimers (Wu et al., 2000, Virology 271, 18-25). Purified P8 molecules also assemble into hexagonal monolayers as well as tubular crystals. To explore the mechanisms of formation of these structures, the configurations of P8 trimers were compared and verified in particles of Rice dwarf virus and in tubular crystals (tubes) whose structure was determined by cryoelectron microscopy using helical reconstruction technique. Remarkable variations in intertrimer contacts were observed in the tubes and in the surface lattice of Rice dwarf virus capsid. Superposition of the atomic structure of P8 trimers in the structures analyzed by cryoelectron microscopy allowed us to identify groups of specific and stable interactions, some of which were preserved in the tubes and the quasi-equivalent T=13 icosahedral lattice of the virion's shell. The flexible nature of the binding between P8 trimers, created via electrostatic interactions that hold radially inward, appears to allow the outer-capsid P8 trimers to envelop the ragged surface of the core, forming the double shell of an intact viral particle.

摘要

在植物呼肠孤病毒的双层衣壳中,外衣壳牢固地附着在T=1核心的三重轴上。然后,它通过P8三聚体之间的侧向相互作用形成T=13晶格(Wu等人,2000年,《病毒学》271卷,18 - 25页)。纯化的P8分子也能组装成六边形单层以及管状晶体。为了探究这些结构的形成机制,我们对水稻矮缩病毒颗粒以及通过螺旋重建技术利用冷冻电子显微镜确定其结构的管状晶体(管状体)中的P8三聚体构型进行了比较和验证。在管状体和水稻矮缩病毒衣壳的表面晶格中观察到三聚体间接触存在显著差异。通过冷冻电子显微镜分析的结构中P8三聚体的原子结构叠加,使我们能够识别出特定且稳定的相互作用基团,其中一些在管状体和病毒粒子外壳准等效的T=13二十面体晶格中得以保留。通过向内径向的静电相互作用形成的P8三聚体之间结合的灵活性,似乎使外衣壳P8三聚体能够包裹核心的粗糙表面,形成完整病毒粒子的双层外壳。

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