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具有可变柔性的环状四脲——合成、晶体结构与性质

Cyclic tetraureas with variable flexibility--synthesis, crystal structures and properties.

作者信息

Meshcheryakov Denys, Arnaud-Neu Françoise, Böhmer Volker, Bolte Michael, Cavaleri Julien, Hubscher-Bruder Véronique, Thondorf Iris, Werner Sabine

机构信息

Fachbereich Chemie, Pharmazie und Geowissenschaften, Abteilung Lehramt Chemie, Johannes Gutenberg-Universität Mainz, Duesbergweg 10-14, D-55099, Mainz, Germany.

出版信息

Org Biomol Chem. 2008 Sep 21;6(18):3244-55. doi: 10.1039/b808773c. Epub 2008 Jul 31.

Abstract

Macrocyclic molecules containing several amide or urea functions may serve as anion receptors. We describe the synthesis of 32-membered macrocycles, in which four rigid xanthene units (X) and/or diphenyl ether units (D) as flexible analogues are linked via urea groups. All six possible combinations of these units (XXXX, XXXD, XXDD, XDXD, XDDD and DDDD) were synthesized and two examples were characterised by single-crystal X-ray analyses (DDDD and two structures for XXXD). Both macrocycles showed distinct differences in their overall conformation and consequently in their hydrogen-bonding pattern. Hydrogen-bonded solvent molecules are found for both compounds and intramolecular hydrogen bonds for the two structures of XXXD, but surprisingly no direct intermolecular hydrogen bonds between the macrocyclic tetraurea molecules. The interaction with various anions was studied by (1)H NMR spectroscopy. Stability constants for all tetramers were determined by UV spectroscopy for complexes with chloride, bromide, acetate and dihydrogenphosphate in acetonitrile-THF (3:1). The strongest binding was found for XXXD and acetate (log beta = 7.4 +/- 0.2), the weakest for XXXX and acetate (log beta = 5.1 +/- 0.5). MD simulations in chloroform and acetonitrile boxes show that all molecules except DDDD adopt very similar conformations characterized by an up-down-up-down arrangement of the spacer groups. Clustered solvation shells of acetonitrile molecules around XXXX and DDDD suggest their preorganization for spherical/planar and tetrahedral/bidentate anions, respectively, which in turn was corroborated by simulation of the corresponding complexes with chloride and dihydrogenphosphate.

摘要

含有多个酰胺或脲官能团的大环分子可作为阴离子受体。我们描述了32元大环的合成,其中四个刚性的氧杂蒽单元(X)和/或作为柔性类似物的二苯醚单元(D)通过脲基相连。合成了这些单元的所有六种可能组合(XXXX、XXXD、XXDD、XDXD、XDDD和DDDD),并通过单晶X射线分析对两个实例进行了表征(DDDD和XXXD的两种结构)。两种大环在其整体构象上表现出明显差异,因此在其氢键模式上也存在差异。两种化合物都发现了氢键结合的溶剂分子,XXXD的两种结构存在分子内氢键,但令人惊讶的是,大环四脲分子之间没有直接的分子间氢键。通过¹H NMR光谱研究了与各种阴离子的相互作用。通过紫外光谱法测定了所有四聚体与乙腈 - 四氢呋喃(3:1)中的氯离子、溴离子、醋酸根离子和磷酸二氢根离子形成的配合物的稳定性常数。发现XXXD与醋酸根离子的结合最强(log β = 7.4 ± 0.2),XXXX与醋酸根离子的结合最弱(log β = 5.1 ± 0.5)。在氯仿和乙腈盒子中的分子动力学模拟表明,除了DDDD之外,所有分子都采用非常相似的构象,其特征是间隔基团呈上下上下排列。XXXX和DDDD周围的乙腈分子形成簇状溶剂化壳,分别表明它们对球形/平面和四面体/双齿阴离子的预组织作用,这反过来又通过与氯离子和磷酸二氢根离子的相应配合物的模拟得到了证实。

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