Marlier John F, Fogle Emily J, Cleland W W
Department of Chemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, California 93407, USA.
Biochemistry. 2008 Oct 21;47(42):11158-63. doi: 10.1021/bi801338c. Epub 2008 Sep 26.
A kinetic investigation of the hydrolysis of semicarbazide by urease gives a relatively flat log V/ K versus pH plot between pH 5 and 8. A log V m versus pH plot shows a shift of the optimum V m toward lower pH when compared to urea. These results are explained in terms of the binding of the outer N of the NHNH 2 group in semicarbazide to an active site residue with a relatively low p K a ( approximately 6). Heavy-atom isotope effects for both leaving groups have been determined. For the NHNH 2 side, (15) k obs = 1.0045, whereas for the NH 2 side, (15) k obs = 1.0010. This is evidence that the NHNH 2 group leaves prior to the NH 2 group. Using previously published data from the urease-catalyzed hydrolysis of formamide, the commitment factors for semicarbazide and urea hydrolysis are estimated to be 2.7 and 1.2, respectively. The carbonyl-C isotope effect ( (13) k obs) equals 1.0357, which is consistent with the transition state occurring during either formation or breakdown of the tetrahedral intermediate.
对脲酶催化氨基脲水解反应进行动力学研究,结果表明,在pH 5至8之间,log V/K对pH的曲线相对平缓。与尿素相比,log Vm对pH的曲线显示最佳Vm向较低pH值偏移。这些结果可以用氨基脲中NHNH2基团的外部N与pKa相对较低(约为6)的活性位点残基结合来解释。已测定了两个离去基团的重原子同位素效应。对于NHNH2侧,(15)kobs = 1.0045,而对于NH2侧,(15)kobs = 1.0010。这证明NHNH2基团比NH2基团先离去。利用先前发表的脲酶催化甲酰胺水解的数据,估计氨基脲和尿素水解的决速因子分别为2.7和1.2。羰基-C同位素效应((13)kobs)等于1.0357,这与四面体中间体形成或分解过程中发生的过渡态一致。