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刀豆(Canavalia ensiformis)脲酶催化氨基脲水解的重原子同位素效应及动力学研究。

A heavy-atom isotope effect and kinetic investigation of the hydrolysis of semicarbazide by urease from jack bean (Canavalia ensiformis).

作者信息

Marlier John F, Fogle Emily J, Cleland W W

机构信息

Department of Chemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, California 93407, USA.

出版信息

Biochemistry. 2008 Oct 21;47(42):11158-63. doi: 10.1021/bi801338c. Epub 2008 Sep 26.

DOI:10.1021/bi801338c
PMID:18817416
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2663901/
Abstract

A kinetic investigation of the hydrolysis of semicarbazide by urease gives a relatively flat log V/ K versus pH plot between pH 5 and 8. A log V m versus pH plot shows a shift of the optimum V m toward lower pH when compared to urea. These results are explained in terms of the binding of the outer N of the NHNH 2 group in semicarbazide to an active site residue with a relatively low p K a ( approximately 6). Heavy-atom isotope effects for both leaving groups have been determined. For the NHNH 2 side, (15) k obs = 1.0045, whereas for the NH 2 side, (15) k obs = 1.0010. This is evidence that the NHNH 2 group leaves prior to the NH 2 group. Using previously published data from the urease-catalyzed hydrolysis of formamide, the commitment factors for semicarbazide and urea hydrolysis are estimated to be 2.7 and 1.2, respectively. The carbonyl-C isotope effect ( (13) k obs) equals 1.0357, which is consistent with the transition state occurring during either formation or breakdown of the tetrahedral intermediate.

摘要

对脲酶催化氨基脲水解反应进行动力学研究,结果表明,在pH 5至8之间,log V/K对pH的曲线相对平缓。与尿素相比,log Vm对pH的曲线显示最佳Vm向较低pH值偏移。这些结果可以用氨基脲中NHNH2基团的外部N与pKa相对较低(约为6)的活性位点残基结合来解释。已测定了两个离去基团的重原子同位素效应。对于NHNH2侧,(15)kobs = 1.0045,而对于NH2侧,(15)kobs = 1.0010。这证明NHNH2基团比NH2基团先离去。利用先前发表的脲酶催化甲酰胺水解的数据,估计氨基脲和尿素水解的决速因子分别为2.7和1.2。羰基-C同位素效应((13)kobs)等于1.0357,这与四面体中间体形成或分解过程中发生的过渡态一致。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82d2/2663901/a34563cf9877/nihms91038f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82d2/2663901/1162eb7f0422/nihms91038f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82d2/2663901/35b2fd518c1a/nihms91038f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82d2/2663901/0794034b2379/nihms91038f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82d2/2663901/6a9da1d1daa0/nihms91038f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82d2/2663901/a34563cf9877/nihms91038f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82d2/2663901/1162eb7f0422/nihms91038f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82d2/2663901/35b2fd518c1a/nihms91038f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82d2/2663901/0794034b2379/nihms91038f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82d2/2663901/6a9da1d1daa0/nihms91038f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82d2/2663901/a34563cf9877/nihms91038f5.jpg

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本文引用的文献

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The burden borne by urease.脲酶所承担的负担。
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Jack bean (Canavalia ensiformis) urease. Probing acid-base groups of the active site by pH variation.刀豆(刀豆属)脲酶。通过改变pH值探究活性位点的酸碱基团。
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Crystallization and preliminary X-ray structure determination of jack bean urease with a bound antibody fragment.结合抗体片段的刀豆脲酶的结晶及初步X射线晶体结构测定
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