曼氏血吸虫中miRNA途径的初步分析。

Preliminary analysis of miRNA pathway in Schistosoma mansoni.

作者信息

Gomes Matheus S, Cabral Fernanda J, Jannotti-Passos Liana K, Carvalho Omar, Rodrigues Vanderlei, Baba Elio H, Sá Renata G

机构信息

Núcleo de Pesquisas em Ciências Biológicas, Universidade Federal de Ouro Preto, Morro do Cruzeiro, 35400-000, Ouro Preto, MG, Brazil.

出版信息

Parasitol Int. 2009 Mar;58(1):61-8. doi: 10.1016/j.parint.2008.10.002. Epub 2008 Oct 28.

Abstract

RNA silencing refers to a series of nuclear and cytoplasmatic processes involved in the post-transcriptional regulation of gene expression or post-transcriptional gene silencing (PTGS), either by sequence-specific mRNA degradation or by translational arrest. The best characterized small RNAs are microRNAs (miRNAs), which predominantly perform gene silencing through post-transcriptional mechanisms. In this work we used bioinformatic approaches to identify the parasitic trematode Schistosoma mansoni sequences that are similar to enzymes involved in the post-transcriptional gene silencing mediated by miRNA pathway. We used amino acid sequences of well-known proteins involved in the miRNA pathway against S. mansoni genome and transcriptome databases identifying a total of 13 putative proteins in the parasite. In addition, the transcript levels of SmDicer1 and SmAgo2/3/4 were identified by qRT-PCR using cercariae, adult worms, eggs and in vitro cultivated schistosomula. Our results showed that the SmDicer1 and SmAgo2/3/4 are differentially expressed during schistosomula development, suggesting that the miRNA pathway is regulated at the transcript level and therefore may control gene expression during the life cycle of S. mansoni.

摘要

RNA沉默是指一系列参与基因表达转录后调控或转录后基因沉默(PTGS)的细胞核和细胞质过程,可通过序列特异性mRNA降解或翻译抑制来实现。最具特征的小RNA是微小RNA(miRNA),其主要通过转录后机制进行基因沉默。在本研究中,我们运用生物信息学方法,鉴定曼氏血吸虫中与参与miRNA途径介导的转录后基因沉默的酶相似的序列。我们将参与miRNA途径的知名蛋白质的氨基酸序列与曼氏血吸虫基因组和转录组数据库进行比对,在该寄生虫中总共鉴定出13种推定蛋白质。此外,利用尾蚴、成虫、虫卵和体外培养的童虫,通过qRT-PCR鉴定了SmDicer1和SmAgo2/3/4的转录水平。我们的结果表明,SmDicer1和SmAgo2/3/4在童虫发育过程中差异表达,这表明miRNA途径在转录水平受到调控,因此可能在曼氏血吸虫的生命周期中控制基因表达。

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