College of Agriculture, Sichuan Agricultural University, Ya-an, China.
DNA Cell Biol. 2009 Jan;28(1):41-7. doi: 10.1089/dna.2008.0799.
RPS19 is a component of the 40S small ribosomal subunit encoded by RPS19 gene. The cDNA of RPS19 was cloned successfully for the first time from the Giant Panda using RT-PCR technology. It was also sequenced, analyzed preliminarily, and expressed in Escherichia coli. The length of cDNA fragment cloned is 469 bp, and it contains an open-reading frame of 438 bp encoding 145 amino acids. Alignment analysis indicates that the nucleotide sequence and the deduced amino acid sequence share a high homology with those of Homo sapiens, Mus musculus, and Rattus norvegicus by 95.89%, 92.47%, and 93.61%, and 100.00%, 99.31%, and 99.31%, respectively. Topology prediction shows that there is one cAMP- and cGMP-dependent protein kinase phosphorylation site, four protein kinase C phosphorylation sites, one casein kinase II phosphorylation site, one tyrosine kinase phosphorylation site, three N-myristoylation sites, one amidation site, and one ribosomal protein S19e signature in the RPS19 protein of the Giant Panda (Ailuropoda melanoleuca). The RPS19 gene was overexpressed in E. coli and expression confirmed by western blotting. The results indicated that the RPS19 gene can be readily expressed in E. coli, and the N-terminally GST-tagged protein was a 42 kDa polypeptide, in good agreement with the predicted molecular weight. The protein obtained could be purified and its function studied.
RPS19 是由 RPS19 基因编码的 40S 小核糖体亚基的组成部分。首次使用 RT-PCR 技术从大熊猫中成功克隆了 RPS19 的 cDNA。它还进行了测序、初步分析,并在大肠杆菌中表达。克隆的 cDNA 片段长度为 469bp,包含一个 438bp 的开放阅读框,编码 145 个氨基酸。比对分析表明,核苷酸序列和推导的氨基酸序列与智人、小家鼠和褐鼠的同源性分别为 95.89%、92.47%和 93.61%,与大熊猫的同源性为 100.00%、99.31%和 99.31%。拓扑预测显示,大熊猫 RPS19 蛋白中有一个 cAMP 和 cGMP 依赖性蛋白激酶磷酸化位点、四个蛋白激酶 C 磷酸化位点、一个酪蛋白激酶 II 磷酸化位点、一个酪氨酸激酶磷酸化位点、三个 N-豆蔻酰化位点、一个酰胺化位点和一个核糖体蛋白 S19e 特征。在大肠杆菌中过表达 RPS19 基因,并通过 Western blot 进行表达验证。结果表明,RPS19 基因可以在大肠杆菌中容易表达,N 端 GST 标记的蛋白为 42kDa 的多肽,与预测的分子量一致。获得的蛋白质可以进行纯化和功能研究。