相似文献
1
Type III restriction enzymes communicate in 1D without looping between their target sites.
Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1748-53. doi: 10.1073/pnas.0807193106. Epub 2009 Jan 30.
2
Translocation, switching and gating: potential roles for ATP in long-range communication on DNA by Type III restriction endonucleases.
Biochem Soc Trans. 2011 Apr;39(2):589-94. doi: 10.1042/BST0390589.
3
DNA communications by Type III restriction endonucleases--confirmation of 1D translocation over 3D looping.
Nucleic Acids Res. 2004 Aug 9;32(14):4166-74. doi: 10.1093/nar/gkh762. Print 2004.
4
DNA cleavage by type III restriction-modification enzyme EcoP15I is independent of spacer distance between two head to head oriented recognition sites.
J Mol Biol. 2001 Sep 28;312(4):687-98. doi: 10.1006/jmbi.2001.4998.
5
Type III restriction enzymes cleave DNA by long-range interaction between sites in both head-to-head and tail-to-tail inverted repeat.
Proc Natl Acad Sci U S A. 2010 May 18;107(20):9123-8. doi: 10.1073/pnas.1001637107. Epub 2010 Apr 30.
6
The helicase-like domains of type III restriction enzymes trigger long-range diffusion along DNA.
Science. 2013 Apr 19;340(6130):353-6. doi: 10.1126/science.1231122.
7
DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes.
EMBO J. 2007 Aug 22;26(16):3815-25. doi: 10.1038/sj.emboj.7601807. Epub 2007 Jul 26.
8
Re-evaluating the kinetics of ATP hydrolysis during initiation of DNA sliding by Type III restriction enzymes.
Nucleic Acids Res. 2015 Dec 15;43(22):10870-81. doi: 10.1093/nar/gkv1154. Epub 2015 Nov 3.
9
Maintaining a sense of direction during long-range communication on DNA.
Biochem Soc Trans. 2010 Apr;38(2):404-9. doi: 10.1042/BST0380404.
10
Scanning force microscopy of DNA translocation by the Type III restriction enzyme EcoP15I.
J Mol Biol. 2004 Aug 6;341(2):337-43. doi: 10.1016/j.jmb.2004.06.031.
引用本文的文献
1
Short-range translocation by a restriction enzyme motor triggers diffusion along DNA.
Nat Chem Biol. 2024 Jun;20(6):689-698. doi: 10.1038/s41589-023-01504-1. Epub 2024 Jan 2.
2
Dynamic interplay between target search and recognition for a Type I CRISPR-Cas system.
Nat Commun. 2023 Jun 20;14(1):3654. doi: 10.1038/s41467-023-38790-1.
3
DNA-mediated coupling of ATPase, translocase and nuclease activities of a Type ISP restriction-modification enzyme.
Nucleic Acids Res. 2020 Mar 18;48(5):2594-2603. doi: 10.1093/nar/gkaa023.
4
Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC.
Nat Commun. 2019 Jul 11;10(1):3058. doi: 10.1038/s41467-019-11084-1.
5
Single-site DNA cleavage by Type III restriction endonuclease requires a site-bound enzyme and a trans-acting enzyme that are ATPase-activated.
Nucleic Acids Res. 2018 Jul 6;46(12):6229-6237. doi: 10.1093/nar/gky344.
6
CgII cleaves DNA using a mechanism distinct from other ATP-dependent restriction endonucleases.
Nucleic Acids Res. 2017 Aug 21;45(14):8435-8447. doi: 10.1093/nar/gkx580.
7
The dynamics of the monomeric restriction endonuclease BcnI during its interaction with DNA.
Nucleic Acids Res. 2017 Jun 2;45(10):5968-5979. doi: 10.1093/nar/gkx294.
8
TrmBL2 from Pyrococcus furiosus Interacts Both with Double-Stranded and Single-Stranded DNA.
PLoS One. 2016 May 23;11(5):e0156098. doi: 10.1371/journal.pone.0156098. eCollection 2016.
9
Re-evaluating the kinetics of ATP hydrolysis during initiation of DNA sliding by Type III restriction enzymes.
Nucleic Acids Res. 2015 Dec 15;43(22):10870-81. doi: 10.1093/nar/gkv1154. Epub 2015 Nov 3.
10
Translocation-coupled DNA cleavage by the Type ISP restriction-modification enzymes.
Nat Chem Biol. 2015 Nov;11(11):870-7. doi: 10.1038/nchembio.1926. Epub 2015 Sep 21.
本文引用的文献
1
Motor step size and ATP coupling efficiency of the dsDNA translocase EcoR124I.
EMBO J. 2008 May 7;27(9):1388-98. doi: 10.1038/emboj.2008.69. Epub 2008 Apr 3.
2
Dynamic basis for one-dimensional DNA scanning by the mismatch repair complex Msh2-Msh6.
Mol Cell. 2007 Nov 9;28(3):359-70. doi: 10.1016/j.molcel.2007.09.008.
3
DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes.
EMBO J. 2007 Aug 22;26(16):3815-25. doi: 10.1038/sj.emboj.7601807. Epub 2007 Jul 26.
4
Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping.
Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12755-60. doi: 10.1073/pnas.0700483104. Epub 2007 Jul 23.
5
Development of fluorescent biosensors for probing the function of motor proteins.
Mol Biosyst. 2007 Apr;3(4):249-56. doi: 10.1039/b614154d. Epub 2007 Jan 4.
6
Single-molecule studies of nucleic acid motors.
Curr Opin Struct Biol. 2007 Feb;17(1):80-6. doi: 10.1016/j.sbi.2006.12.003. Epub 2007 Jan 5.
7
Tension-dependent DNA cleavage by restriction endonucleases: two-site enzymes are "switched off" at low force.
Proc Natl Acad Sci U S A. 2006 Aug 1;103(31):11555-60. doi: 10.1073/pnas.0604463103. Epub 2006 Jul 25.
8
When a helicase is not a helicase: dsDNA tracking by the motor protein EcoR124I.
EMBO J. 2006 May 17;25(10):2230-9. doi: 10.1038/sj.emboj.7601104. Epub 2006 Apr 27.
9
Volume-exclusion effects in tethered-particle experiments: bead size matters.
Phys Rev Lett. 2006 Mar 3;96(8):088306. doi: 10.1103/PhysRevLett.96.088306.
10
DNA mismatch repair: functions and mechanisms.
Chem Rev. 2006 Feb;106(2):302-23. doi: 10.1021/cr0404794.
Zotero 插件