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结核分枝杆菌H37Rv转录抑制因子SirR的表达、纯化、结晶及初步X射线衍射分析

Expression, purification, crystallization and preliminary X-ray diffraction analysis of the transcriptional repressor SirR from Mycobacterium tuberculosis H37Rv.

作者信息

Saha Baisakhee, Mukherjee Somnath, Dutta Debajyoti, Das Amit Kumar

机构信息

Department of Biotechnology, Indian Institute of Technology, Kharagpur 721 302, India.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Feb 1;65(Pt 2):154-8. doi: 10.1107/S1744309108043534. Epub 2009 Jan 31.

Abstract

SirR, a metal-dependent transcriptional repressor from Mycobacterium tuberculosis (Rv2788), was cloned in pQE30 expression vector with an N-terminal His(6) tag for heterologous overexpression in Escherichia coli M15 (pREP4) cells and purified to homogeneity using chromatographic procedures. The purified protein was crystallized using the sitting-drop vapour-diffusion technique. The crystals belonged to the tetragonal space group P4(1)2(1)2/P4(3)2(1)2, with unit-cell parameters a = 105.21, b = 105.21, c = 144.85 A. The X-ray diffraction data were processed to a maximum resolution of 2.5 A. The Matthews coefficient suggests the presence of two (V(M) = 4.01 A(3) Da(-1)) to four (V(M) = 2.0 A(3) Da(-1)) molecules in the asymmetric unit. Calculation of the self-rotation function shows a crystallographic fourfold symmetry axis along the z axis (chi = 90 degrees) and also a twofold symmetry axis around the z axis (chi = 180 degrees).

摘要

来自结核分枝杆菌的金属依赖性转录抑制因子SirR(Rv2788)被克隆到带有N端His(6)标签的pQE30表达载体中,以便在大肠杆菌M15(pREP4)细胞中进行异源过量表达,并使用色谱方法纯化至同质。使用坐滴气相扩散技术对纯化后的蛋白质进行结晶。晶体属于四方晶系空间群P4(1)2(1)2/P4(3)2(1)2,晶胞参数a = 105.21,b = 105.21,c = 144.85 Å。X射线衍射数据处理后的最大分辨率为2.5 Å。马修斯系数表明不对称单元中存在两个(V(M) = 4.01 Å3 Da-1)到四个(V(M) = 2.0 Å3 Da-1)分子。自旋转函数计算显示沿z轴(χ = 90度)存在一个晶体学四重对称轴,并且围绕z轴(χ = 180度)也存在一个二重对称轴。

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本文引用的文献

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The Metal-Dependent Regulators FurA and FurB from Mycobacterium Tuberculosis.
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2
Crystal structure and function of the zinc uptake regulator FurB from Mycobacterium tuberculosis.
J Biol Chem. 2007 Mar 30;282(13):9914-9922. doi: 10.1074/jbc.M609974200. Epub 2007 Jan 9.
5
Mycobacterium tuberculosis FurA autoregulates its own expression.
J Bacteriol. 2003 Sep;185(18):5357-62. doi: 10.1128/JB.185.18.5357-5362.2003.
6
Mechanisms of iron regulation in mycobacteria: role in physiology and virulence.
Mol Microbiol. 2003 Mar;47(6):1485-94. doi: 10.1046/j.1365-2958.2003.03384.x.
8
Prokaryotic transcription regulators: more than just the helix-turn-helix motif.
Curr Opin Struct Biol. 2002 Feb;12(1):98-106. doi: 10.1016/s0959-440x(02)00295-6.
10
Transcriptional regulation of furA and katG upon oxidative stress in Mycobacterium smegmatis.
J Bacteriol. 2001 Dec;183(23):6801-6. doi: 10.1128/JB.183.23.6801-6806.2001.

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