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晶格肽吸附的改进模拟

Improved simulations of lattice peptide adsorption.

作者信息

Swetnam Adam D, Allen Michael P

机构信息

Department of Physics and Centre for Scientific Computing, University of Warwick, Coventry, UK CV4 7AL.

出版信息

Phys Chem Chem Phys. 2009 Mar 28;11(12):2046-55. doi: 10.1039/b818067a. Epub 2009 Jan 28.

Abstract

We propose several improvements to the Monte Carlo simulation techniques for lattice peptide adsorption on surfaces. Firstly, we examine the implementation of "pull" moves and discuss the most efficient way of selecting them. Secondly, we explicitly show how Wang-Landau sampling may be used to calculate the appropriate density of states for a peptide chain in contact with a single surface, and how the information from such a simulation may be used to calculate results for slit geometry with a range of wall separations. Lastly, we consider further possible modifications of the simulation method and its application to adsorption on structured and patterned surfaces.

摘要

我们针对晶格肽在表面吸附的蒙特卡罗模拟技术提出了若干改进。首先,我们研究了“拉动”移动的实现方式,并讨论了选择它们的最有效方法。其次,我们明确展示了如何使用王-兰道抽样来计算与单个表面接触的肽链的适当态密度,以及如何利用这种模拟得到的信息来计算具有一系列壁间距的狭缝几何结构的结果。最后,我们考虑了模拟方法的进一步可能改进及其在结构化和图案化表面吸附中的应用。

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