Stefanić I, Ljubić I, Bonifacić M, Sabljić A, Asmus K-D, Armstrong D A
The Culver Academies, Culver, IN, USA.
Phys Chem Chem Phys. 2009 Apr 7;11(13):2256-67. doi: 10.1039/b816353g. Epub 2009 Jan 19.
A pulse radiolysis study was carried out of the reaction rate constants and kinetic isotope effects of hydroxyl-radical-induced H/D abstraction from the most-simple alpha-amino acid glycine in its anionic form in water. The rate constants and yields of three predominantly formed radical products, glycyl (NH2-*CH-CO2-), aminomethyl (NH2-*CH2), and aminyl (NH-CH2-CO2-) radicals, as well as of their partially or fully deuterated analogs, were found to be of comparable magnitude. The primary, secondary, and primary/secondary H/D kinetic isotope effects on the rate constants were determined with respect to each of the three radicals. The unusual variety of products for such an elementary reaction between two small and simple species indicates a complex mechanism with several reactions taking place simultaneously. Thus, a theoretical modeling of the reaction mechanism and kinetics in the gas- and aqueous phase was performed by using the unrestricted density functional theory with the BB1K functional (employing the polarizable continuum model for the aqueous phase), unrestricted coupled cluster UCCSD(T) method, and improved canonical variational theory. Several hydrogen-bonded prereaction complexes and transition states were detected. In particular, the calculations pointed to a significant mechanistic role of the three-electron two-orbital (sigma/sigma N therefore O) hemibonded prereaction complexes in the aqueous phase. A good agreement with the experimental rate constants and kinetic isotope effects was achieved by downshifting the calculated reaction barriers by 3 kcal mol(-1) and damping the NH(D) stretching frequency by a factor of 0.86.
进行了一项脉冲辐解研究,以测定在水中阴离子形式的最简单α-氨基酸甘氨酸中,羟基自由基引发的H/D夺取反应的速率常数和动力学同位素效应。发现三种主要形成的自由基产物,即甘氨酰基(NH2-*CH-CO2-)、氨甲基(NH2-*CH2)和氨基自由基(NH-CH2-CO2-)及其部分或完全氘代类似物的速率常数和产率具有相当的量级。针对这三种自由基中的每一种,测定了对速率常数的一级、二级以及一级/二级H/D动力学同位素效应。对于两个小而简单的物种之间的这种基元反应,产物种类异常多样,这表明存在一个同时发生多个反应的复杂机制。因此,通过使用采用BB1K泛函的无限制密度泛函理论(对水相采用极化连续介质模型)、无限制耦合簇UCCSD(T)方法以及改进的正则变分理论,对气相和水相中的反应机理和动力学进行了理论建模。检测到了几种氢键预反应复合物和过渡态。特别是,计算结果表明三电子双轨道(σ/σ N因此O)半键合预反应复合物在水相中具有重要的机理作用。通过将计算出的反应势垒降低3 kcal mol(-1),并将NH(D)伸缩频率衰减0.86倍,实现了与实验速率常数和动力学同位素效应的良好吻合。