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智能解读难以理解的设计:系统生物学中的算法代数模型检查

Intelligently deciphering unintelligible designs: algorithmic algebraic model checking in systems biology.

作者信息

Mishra Bud

机构信息

Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street, New York, NY 10012, USA.

出版信息

J R Soc Interface. 2009 Jul 6;6(36):575-97. doi: 10.1098/rsif.2008.0546. Epub 2009 Apr 8.

Abstract

Systems biology, as a subject, has captured the imagination of both biologists and systems scientists alike. But what is it? This review provides one researcher's somewhat idiosyncratic view of the subject, but also aims to persuade young scientists to examine the possible evolution of this subject in a rich historical context. In particular, one may wish to read this review to envision a subject built out of a consilience of many interesting concepts from systems sciences, logic and model theory, and algebra, culminating in novel tools, techniques and theories that can reveal deep principles in biology--seen beyond mere observations. A particular focus in this review is on approaches embedded in an embryonic program, dubbed 'algorithmic algebraic model checking', and its powers and limitations.

摘要

系统生物学作为一门学科,吸引了生物学家和系统科学家的关注。但它究竟是什么呢?这篇综述呈现了一位研究者对该学科颇具个性的观点,同时旨在说服年轻科学家在丰富的历史背景下审视这一学科可能的发展。特别是,读者或许希望通过阅读这篇综述,去构想一个由系统科学、逻辑与模型理论以及代数中诸多有趣概念融合而成的学科,最终形成能够揭示生物学深层原理(超越单纯观察)的新颖工具、技术和理论。本综述特别关注了一个胚胎程序中所蕴含的方法,即“算法代数模型检验”,以及它的优势与局限。

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