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甲基钴胺素和乙基钴胺素中Co-C键的光解离:TD-DFT计算的见解

Photodissociation of Co-C bond in methyl- and ethylcobalamin: an insight from TD-DFT calculations.

作者信息

Lodowski Piotr, Jaworska Maria, Andruniów Tadeusz, Kumar Manoj, Kozlowski Pawel M

机构信息

Department of Theoretical Chemistry, Institute of Chemistry, University of Silesia, Szkolna 9, PL-40 006 Katowice, Poland.

出版信息

J Phys Chem B. 2009 May 14;113(19):6898-909. doi: 10.1021/jp810223h.

Abstract

The mechanism of Co-C bond photodissociation in methylcobalamin (MeCbl) and ethylcobalamin (EtCbl) has been examined by means of time-dependent density functional theory (TD-DFT). The present contribution extends our recent study (J. Phys. Chem. B 2007, 111, 2419-2422) where relevant excited states involved in the photolysis of MeCbl have been identified. To obtain reliable structural models, the high-resolution crystal structure of MeCbl was used as the source of initial coordinates. The full MeCbl was simplified by replacing the corrin side chains by H atoms and the resulting geometry was optimized. The model of EtCbl was generated from the simplified structure of MeCbl by replacing methyl group with ethyl. For both models, the low-lying singlet and triplet excited states have been computed along the Co-C coordinate at TD-DFT/BP86/6-31G(d) level of theory. These calculations reveal that the photodissociation process is mediated by the repulsive 3(sigmaCo-C-->sigmaCo-C) triplet state. The overall mechanism of photodissociation for both systems is similar but energetic details are different, reflecting the difference in Co-C bond strength in MeCbl and EtCbl. In both cases the key intermediate involved in Co-C bond photodissociation is identified as first excited state (S1). The S1 intermediate has mixed character: it can be described as predominantly dCo-->picorrin metal-to-ligand charge transfer (MLCT) state with contribution from sigma bond to corrin charge transfer (SBLCT) where upon electronic excitation the electron density shifts from the axial NIm-Co-C bonding to corrin ligand. The optimized geometry of the S1 indicates that the structure of the corrin remains essentially unchanged in comparison to ground state (S0). The major structural change occurs in the NIm-Co-C moiety, which becomes bent with elongated Co-C bond in S1 state. Finally, it is proposed that the photolysis of Co-C bond is in line with the mechanism of heme-CO photolysis, where participation of the dFe-->pi*porphyrin has been suggested.

摘要

利用含时密度泛函理论(TD-DFT)研究了甲基钴胺素(MeCbl)和乙基钴胺素(EtCbl)中Co-C键的光解离机制。本研究扩展了我们最近的一项研究(《物理化学杂志B》2007年,111卷,2419 - 2422页),在该研究中已确定了MeCbl光解过程中涉及的相关激发态。为了获得可靠的结构模型,使用MeCbl的高分辨率晶体结构作为初始坐标的来源。通过用氢原子取代咕啉侧链简化了完整的MeCbl,并对所得几何结构进行了优化。EtCbl的模型是由MeCbl的简化结构通过将甲基替换为乙基生成的。对于这两种模型,在TD-DFT/BP86/6 - 31G(d)理论水平下,沿着Co-C坐标计算了低激发单重态和三重态激发态。这些计算表明,光解离过程是由排斥性的3(sigmaCo-C→sigmaCo-C)三重态介导的。两个体系的光解离总体机制相似,但能量细节不同,这反映了MeCbl和EtCbl中Co-C键强度的差异。在这两种情况下,Co-C键光解离所涉及的关键中间体都被确定为第一激发态(S1)。S1中间体具有混合特征:它主要可描述为dCo→pi咕啉金属到配体的电荷转移(MLCT)态,并伴有sigma键到咕啉电荷转移(SBLCT)的贡献,在电子激发时,电子密度从轴向NIm-Co-C键转移到咕啉配体。S1的优化几何结构表明,与基态(S0)相比,咕啉的结构基本保持不变。主要的结构变化发生在NIm-Co-C部分,在S1态中它会弯曲且Co-C键伸长。最后,有人提出Co-C键的光解与血红素-CO光解机制一致,其中有人提出了dFe→pi*卟啉的参与。

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