补体受体2(CR2/CD21)启动子区域的细胞和阶段特异性染色质结构与B细胞中CBF1和C/EBP-β的结合情况一致。

Cell- and stage-specific chromatin structure across the Complement receptor 2 (CR2/CD21) promoter coincide with CBF1 and C/EBP-beta binding in B cells.

作者信息

Cruickshank Mark N, Fenwick Emily, Karimi Mahdad, Abraham Lawrence J, Ulgiati Daniela

机构信息

The University of Western Australia, Australia.

出版信息

Mol Immunol. 2009 Aug;46(13):2613-22. doi: 10.1016/j.molimm.2009.05.001. Epub 2009 May 31.

Abstract

Stringent developmental transcription requires multiple transcription factor (TF) binding sites, cell-specific expression of signaling molecules, TFs and co-regulators and appropriate chromatin structure. During B-lymphopoiesis, human Complement receptor 2 (CR2/CD21) is detected on immature and mature B cells but not on B cell precursors and plasma cells. We examined cell- and stage-specific human CR2 gene regulation using cell lines modeling B-lymphopoiesis. Chromatin accessibility assays revealed a region between -409 and -262 with enhanced accessibility in mature B cells and pre-B cells, compared to either non-lymphoid or plasma cell-types, however, accessibility near the transcription start site (TSS) was elevated only in CR2-expressing B cells. A correlation between histone acetylation and CR2 expression was observed, while histone H3K4 dimethylation was enriched near the TSS in both CR2-expressing B cells and non-expressing pre-B cells. Candidate sites within the CR2 promoter were identified which could regulate chromatin, including a matrix attachment region associated with CDP, SATB1/BRIGHT and CEBP-beta sites as well as two CBF1 sites. ChIP assays verified that both CBF1 and C/EBP-beta bind the CR2 promoter in B cells raising the possibility that these factors facilitate or respond to alterations in chromatin structure to control the timing and/or level of CR2 transcription.

摘要

严格的发育转录需要多个转录因子(TF)结合位点、信号分子、TF和共调节因子的细胞特异性表达以及合适的染色质结构。在B淋巴细胞生成过程中,人补体受体2(CR2/CD21)在未成熟和成熟B细胞上被检测到,但在B细胞前体和浆细胞上未被检测到。我们使用模拟B淋巴细胞生成的细胞系研究了细胞和阶段特异性的人CR2基因调控。染色质可及性分析显示,与非淋巴细胞或浆细胞类型相比,在成熟B细胞和前B细胞中,-409至-262之间的区域可及性增强,然而,仅在表达CR2的B细胞中转录起始位点(TSS)附近的可及性升高。观察到组蛋白乙酰化与CR2表达之间的相关性,而在表达CR2的B细胞和不表达CR2的前B细胞中,组蛋白H3K4二甲基化在TSS附近均富集。在CR2启动子内鉴定出了可能调节染色质的候选位点,包括与CDP、SATB1/BRIGHT和CEBP-β位点相关的基质附着区域以及两个CBF1位点。染色质免疫沉淀分析验证了CBF1和C/EBP-β在B细胞中均与CR2启动子结合,这增加了这些因子促进或响应染色质结构改变以控制CR2转录的时间和/或水平的可能性。

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